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BioLiP
>protein
EIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELREASVTPS
NLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYN
TDTDNCREVIITPNSAWGGEGSLGCGIGYGYLHRIPT

The query sequence (length=197) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gmj:B 224 197 1.0000 0.8795 1.0000 4.41e-147 5gmi:A, 5gmi:B, 5gmj:A, 5h3j:A
2 4kfv:A 199 192 0.6853 0.6784 0.7031 1.73e-106 4rey:A
3 7xs0:A 376 156 0.1929 0.1011 0.2436 6.18e-04
4 7xs0:A 376 37 0.0761 0.0399 0.4054 8.9
5 5bsm:A 530 88 0.1320 0.0491 0.2955 0.022 5bsm:B, 5bsr:A, 5bst:A, 5bsu:A, 5bsv:A, 5bsw:A, 5bsw:B, 5u95:D, 5u95:B, 5u95:C
6 6xa7:B 96 73 0.1218 0.2500 0.3288 0.042 7qrt:A, 7qrt:B, 6xa7:A, 6xa7:C, 6xa7:D
7 5el2:A 125 49 0.0863 0.1360 0.3469 0.70 5el2:B, 4fqt:A, 4fqt:B, 3n7h:A, 3n7h:B, 3ogn:A, 3ogn:B
8 4ynn:A 400 58 0.1015 0.0500 0.3448 0.70 4ynn:B, 4ynn:C, 4ynn:D, 4ynn:E, 4ynn:F, 4ynn:G, 4ynn:H
9 3ch8:A 190 150 0.2081 0.2158 0.2733 0.85 2qbw:A
10 1aut:C 240 69 0.0761 0.0625 0.2174 1.2 3f6u:H
11 2egn:A 83 47 0.1015 0.2410 0.4255 1.6
12 3pv3:A 392 35 0.0812 0.0408 0.4571 2.6 3pv3:B, 3pv3:C, 3pv3:D
13 6rxt:UG 479 45 0.0711 0.0292 0.3111 3.7 5oql:F, 6rxu:UG, 6rxv:UG, 6rxx:UG, 6rxy:UG, 6rxz:UG
14 2r4h:C 98 28 0.0609 0.1224 0.4286 6.3
15 6ar4:B 87 52 0.0812 0.1839 0.3077 6.3 6ar4:A, 6bjo:A, 6bjo:B, 2pku:A
16 3wy9:A 416 69 0.0914 0.0433 0.2609 7.4 3wy9:B, 3wya:A
17 4xyj:A 768 48 0.0863 0.0221 0.3542 7.5 4rh3:A, 4rh3:B, 4rh3:C, 4rh3:D, 4u1r:A, 4u1r:B, 4u1r:C, 4u1r:D, 4wl0:A, 4wl0:B, 4wl0:C, 4wl0:D, 4xyj:B, 4xyj:C, 4xyj:D, 4xyj:E, 4xyj:F, 4xyj:G, 4xyj:H, 4xyk:A, 4xyk:B, 4xyk:C, 4xyk:D, 4xz2:A, 4xz2:B, 4xz2:C, 4xz2:D
18 5ucd:A 435 64 0.0812 0.0368 0.2500 8.5 5ucd:B
19 6l8n:A 810 41 0.0558 0.0136 0.2683 9.4
20 5wkr:A 215 28 0.0660 0.0605 0.4643 9.8 5wks:A
21 4lxo:A 184 64 0.0914 0.0978 0.2812 9.8 4lxo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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