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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EINEPPPNICEQCLGDEANIRMTKIPQGSECKICTLPFTLYHFKTSKRSNNIIKTLICVRCATQRNICQCCMLDSRWHIP
IQLRDHLISLVNEENVMTEEAKNDMMKRFLSLKNVKLGGAQITSDPSEADNIVDKLKNILLKNPSTKSFFLYNIDASIPE
WKITDTVSQLLLSLIVNHKAKCGGLRFQSSELGERFVSKIIFIIPWSSTAENIKLSLSLNKLIQLEL

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5mps:N 227 227 1.0000 1.0000 1.0000 1.55e-168 5lj3:N, 5lj5:N, 5mq0:N
2 7b9v:N 264 264 0.9868 0.8485 0.8485 2.09e-153
3 6exn:N 242 246 0.9648 0.9050 0.8902 2.57e-152 6bk8:F
4 7dco:Q 292 290 1.0000 0.7774 0.7828 5.56e-152 6j6g:Q, 6j6h:Q, 6j6n:Q, 6j6q:Q
5 5gm6:Q 185 208 0.8062 0.9892 0.8798 1.44e-128 5gmk:Q, 5wsg:Q, 5ylz:M
6 5y88:M 182 191 0.6520 0.8132 0.7749 1.17e-100
7 3jb9:a 255 193 0.2775 0.2471 0.3264 6.13e-26
8 8ro0:O 342 156 0.2203 0.1462 0.3205 2.69e-18 8ro1:O
9 8ch6:U 295 126 0.2026 0.1559 0.3651 3.46e-17 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
10 7abi:P 237 206 0.2555 0.2447 0.2816 1.03e-16 7aav:P, 7abg:P
11 5xkd:A 445 32 0.0529 0.0270 0.3750 0.65 5xkd:B, 5xkd:C, 5xkd:D
12 3ngl:A 275 41 0.0617 0.0509 0.3415 2.6 3ngl:C
13 5nz8:A 884 56 0.0749 0.0192 0.3036 3.7
14 2qtt:A 248 48 0.0617 0.0565 0.2917 4.0 2h8g:A, 2h8g:B, 3lgs:A, 3lgs:B, 3lgs:C, 3lgs:D, 2qtg:A, 2qtg:B, 2qtt:B
15 5a0u:H 795 45 0.0749 0.0214 0.3778 4.3 5a0u:A, 5a0u:B, 5a0u:C, 5a0u:D, 5a0u:E, 5a0u:F, 5a0u:G, 9f3w:A, 9f3w:B, 9f3w:C, 9f3w:D, 9f3w:E, 9f3w:F, 9f3w:G, 9f3w:H, 9f3x:A, 9f3x:B, 9f3x:C, 9f3x:D, 9f3x:E, 9f3x:F, 9f3x:G, 9f3x:H, 9f3y:A, 9f3y:B, 9f3y:C, 9f3y:D, 9f3y:E, 9f3y:F, 9f3y:G, 9f3y:H
16 8h8j:C 283 28 0.0485 0.0389 0.3929 5.4
17 8p5d:SE0 260 126 0.1189 0.1038 0.2143 5.7 8p60:SE0, 8p60:RE0, 7qca:SE0
18 5dgk:A 519 46 0.0661 0.0289 0.3261 7.6 5dgk:B
19 1ad3:A 446 80 0.1145 0.0583 0.3250 8.0 1ad3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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