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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EILTLDFNLAELPSAQHRAGLAGLILMIRELKKWPWFKIRQKEKDVLLSIENLDQYGASIQLNLEGLIALFDLAYLSFTE
ERKSKYFYDVITPQGGFLAGWDKSDGQIWLRIWRDMFWSIIKGVPATRNPFNNRCGLNLNAGDSFSKDVESVWKSLQNAE
KTTGQSGAFYLGAMAVNAENVSTDDLIKWQFLLHFWAFVAQVYCPYILDKDGKRNFNGYVIVIPDIANLEDFCDILPDVL
SNRNSKAFGFRPQESVIDVPEQGALELLNLIKQRIAKKAGSGLLSDLIVGVEVIHAEKQGNSIKLHSVSYLQPNEESVDD
YNAIKNSYYCPWFRRQLLLNLVLASQSWLKRHPWYGFGDLLSRIPQRWSYFSHDARQLFTQKYAEIVYKIAQGFVLSKLS
SKHPKLEREYNDKKEKVVNEAFLAIEKQAFIDYFVSTLQDEFVDFAQKLFQDTDEIRSLTLLALSSQ

The query sequence (length=467) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8h67:L 496 491 0.9936 0.9355 0.9450 0.0 8h7q:K, 8h7q:N, 8ip0:J, 8ip0:K, 8ip0:L
2 8h7q:O 85 89 0.1627 0.8941 0.8539 2.73e-38
3 7cpx:A 2262 59 0.0450 0.0093 0.3559 0.38 7cpx:B, 7cpy:A, 7cpy:B
4 4gdp:B 502 81 0.0600 0.0558 0.3457 0.52 3bi2:A, 3bi2:B, 3bi4:A, 3bi4:B, 3bi5:A, 3bi5:B, 3bnm:B, 3bnm:A, 3bnu:B, 3bnu:A, 3cn8:B, 3cn8:A, 3cnd:B, 3cnd:A, 3cnp:B, 3cnp:A, 3cns:A, 3cns:B, 3cnt:B, 3cnt:A, 4ech:A, 4ech:B, 4gdp:A, 4gdp:C, 4gdp:D, 1rsg:B, 1xpq:A, 1xpq:B, 1xpq:C, 1xpq:D, 1yy5:A, 1yy5:B, 1z6l:A, 1z6l:B
5 1rsg:A 481 81 0.0600 0.0582 0.3457 0.53
6 3awj:A 380 86 0.0471 0.0579 0.2558 1.1
7 2hw5:C 260 158 0.0857 0.1538 0.2532 1.4
8 3dtt:B 222 73 0.0450 0.0946 0.2877 2.0 3dtt:A
9 4cx9:A 128 23 0.0236 0.0859 0.4783 2.4 4cx9:B, 4ulv:A, 4ulv:B
10 4y5q:A 449 82 0.0428 0.0445 0.2439 3.4 9d8s:A, 3igo:A, 3mwu:A, 3ncg:A, 2wei:A
11 6wgc:D 436 37 0.0300 0.0321 0.3784 4.1 7tjf:D, 7tjh:D, 7tji:D, 7tjj:D, 7tjk:D, 6wgg:D, 6wgi:D
12 5v8f:D 456 37 0.0300 0.0307 0.3784 4.6 7mca:D, 6rqc:D, 5zr1:D
13 6bz0:A 469 77 0.0407 0.0405 0.2468 6.1 6bz0:B, 6bz0:C, 6bz0:D
14 4usq:F 341 59 0.0407 0.0557 0.3220 6.7 4usq:A
15 7v0b:A 539 29 0.0300 0.0260 0.4828 6.9 7v0b:B, 7v0b:C, 7v0b:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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