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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EIKPATGRLGVLVVGVGGAVATTMIVGTLASRKGLAKPIGSITQLATMRMENNEEKLIKDVVPLTDLNDIVFGGWDIFPD
NAYEAAMYAEVLKEKDLNGVKDELEAIKPMPAAFDHNWAKRLNGTHIKKAATRWEMVEQLRQDIRDFKAANNCERVVVLW
AASTEIYIPLSDEHMSLAALEKAMKDNNTEVISPSMCYAYAAIAEDAPFVMGAPNLCVDTPAMWEFSKQKNVPISGKDFK
SGQTLMKTVLAPMFKTRMLGVNGWFSTNILGNRDGEVLDDPDNFKTKEVSKLSVIDTIFEPEKYPDLYGDVYHKVRINYY
PPRKDNKEAWDNIDIFGWMGYPMEIKVNFLCRDSILAAPIALDLVLFSDLAMRAGMCGIQTWLSFFCKSPMHDFEHQPEH
DLFTQWRMVKQTLRNMIGEKEPDYLA

The query sequence (length=426) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7nwr:B 426 426 1.0000 1.0000 1.0000 0.0 7nwr:A
2 9f2k:A 513 396 0.3146 0.2612 0.3384 4.51e-57
3 1jki:A 525 457 0.3146 0.2552 0.2932 6.15e-55 1jki:B, 1la2:A, 1la2:B, 1la2:C, 1la2:D, 1p1h:A, 1p1h:C, 1p1i:A, 1p1j:A, 1p1j:B, 1p1k:A, 1p1k:B, 1rm0:A, 1rm0:B
4 3qvs:A 392 397 0.3192 0.3469 0.3426 3.68e-48 3qvt:A, 3qvw:A, 3qvx:A, 3qw2:A, 3qw2:B, 3qw2:C, 3qw2:D, 1u1i:A, 1u1i:B, 1u1i:C, 1u1i:D
5 1vko:A 511 374 0.2700 0.2250 0.3075 9.32e-47
6 1p1i:B 498 454 0.2770 0.2369 0.2599 1.50e-41 1p1h:B, 1p1h:D
7 1jkf:A 466 454 0.2606 0.2382 0.2445 4.04e-34 1jkf:B
8 6k96:B 343 203 0.1197 0.1487 0.2512 2.83e-11 6k96:A
9 3cin:A 382 395 0.2300 0.2565 0.2481 7.11e-10
10 1gr0:A 328 79 0.0610 0.0793 0.3291 0.004
11 6h7f:A 671 88 0.0634 0.0402 0.3068 0.15 6h7f:B, 6h7f:C, 6h7v:B, 6hcp:A, 6hcp:B, 6hcp:C
12 3k4y:A 260 122 0.0563 0.0923 0.1967 0.96 3k4y:B, 3k52:A, 3k52:B, 3k56:A, 3k56:B
13 6ip5:2z 150 65 0.0399 0.1133 0.2615 1.5 7a01:G5, 7a09:k, 5a2q:S, 5aj0:BS, 9bdl:AS18, 9bdn:AS18, 9bdp:AS18, 8bhf:T3, 9bkd:f, 9bln:f, 8btk:Ar, 7cpu:SS, 7cpv:SS, 4d5l:S, 4d61:S, 6d90:TT, 6d9j:TT, 9f1b:Ar, 9f1c:Ar, 9f1d:Ar, 6fec:L, 5flx:S, 6g18:S, 6g4s:S, 6g4w:S, 6g51:S, 6g53:S, 6g5h:S, 6g5i:S, 8g5y:SS, 8g5z:SS, 8g60:SS, 8g61:SS, 8g6j:SS, 8glp:SS, 6gz3:BS, 6gz4:BS, 6gz5:BS, 6hcf:T1, 6hcj:T2, 6hcm:T1, 6hcq:T2, 8ifd:2z, 8ife:2z, 6ip6:2z, 6ip8:2z, 3j7p:SS, 3j7r:SS, 3jag:SS, 3jah:SS, 3jai:SS, 3jaj:SS, 3jan:SS, 8jdj:AE, 8jdk:AE, 8jdl:AE, 8jdm:AE, 7jqb:T, 7jqc:T, 5k0y:L, 8k2c:SS, 7k5i:S, 4kzx:S, 4kzy:S, 4kzz:S, 5lks:SS, 7ls1:A3, 7ls2:A3, 5lzs:SS, 5lzt:SS, 5lzu:SS, 5lzv:SS, 5lzw:SS, 5lzx:SS, 5lzy:SS, 5lzz:SS, 7mdz:SS, 6mtb:SS, 6mtc:SS, 6mtd:SS, 6mte:SS, 7nwg:T2, 7nwh:SS, 7nwi:SS, 7o7y:Ar, 7o7z:Ar, 7o80:Ar, 7o81:Ar, 5oa3:S, 6ole:SS, 6olf:SS, 6olg:BS, 6oli:SS, 6olz:BS, 6om0:SS, 6om7:SS, 7oya:S2, 7oyb:S2, 7oyc:S2, 7oyd:SS, 8oz0:n, 8p03:U, 8p09:U, 8p2k:Ar, 6p4g:T, 6p4h:T, 6p5i:T, 6p5j:T, 6p5k:T, 6p5n:T, 8pj1:f, 8pj2:f, 8pj3:f, 8pj4:f, 8pj5:f, 8pj6:f, 8ppk:S, 8ppl:AS, 8q7z:Ar, 8q87:Ar, 7qgg:SS, 8qoi:SS, 7qp6:f, 7qp7:f, 7qvp:SS, 7qvp:RS, 6qzp:SS, 7r4x:S, 6r5q:II, 6r6g:II, 6r6p:II, 6r7q:II, 8scb:SS, 6sgc:T1, 7syg:T, 7syh:T, 7syi:T, 7syj:T, 7syk:T, 7syl:T, 7sym:T, 7syn:T, 7syo:T, 7syp:T, 7syq:T, 7syr:T, 7sys:T, 7syt:T, 7syu:T, 7syv:T, 7syw:T, 7syx:T, 5t2c:A0, 8t4s:S, 7toq:AS18, 7tor:AS18, 7tql:T, 7ucj:SS, 7uck:SS, 4ug0:SS, 4ujc:CS, 4ujd:CS, 4uje:BS, 4v5z:Am, 4v6x:AS, 5vyc:S1, 5vyc:S6, 5vyc:S2, 5vyc:S5, 5vyc:S3, 5vyc:S4, 6w2s:T, 6w2t:T, 7wtt:S, 7wtu:S, 7wtv:S, 7wtw:S, 7wtx:S, 7wtz:S, 7wu0:S, 6xa1:SS, 7xnx:SS, 7xny:SS, 8xsx:SS, 8xsy:SS, 8xsz:SS, 8xxl:SS, 8xxm:SS, 8xxn:SS, 6y0g:SS, 8y0w:SS, 8y0x:SS, 6y2l:SS, 6y57:SS, 6yal:U, 6yam:U, 6yan:U, 6ybs:f, 8yoo:SS, 8yop:SS, 6z6l:SS, 6z6m:SS, 6z6n:SS, 7zjw:Sd, 7zjx:Sd, 6zlw:T, 6zm7:SS, 6zme:SS, 6zmi:SS, 6zmo:SS, 6zmt:T, 6zmw:f, 6zn5:T, 6zoj:S, 6zol:S, 6zon:k, 6zp4:k, 6zuo:S, 6zv6:S, 6zvh:S, 6zvj:k, 6zvk:G5, 6zxd:S, 6zxe:S, 6zxf:S, 6zxg:S, 6zxh:S
14 6tnm:A 719 103 0.0634 0.0376 0.2621 1.7
15 3hlf:A 425 99 0.0563 0.0565 0.2424 2.2 3hld:A, 3hle:A, 3hlg:A
16 8fvu:A 1361 80 0.0469 0.0147 0.2500 3.2 2vm5:A
17 3pcs:B 355 86 0.0493 0.0592 0.2442 3.2 4fma:A, 4fma:B, 4fma:C, 4fma:D, 4fma:E, 4fma:F, 4fma:H, 4fma:I, 4fma:J, 4fma:L, 4fmd:E, 3pcs:A, 3pcs:C, 3pcs:D
18 6m6l:B 445 51 0.0423 0.0404 0.3529 3.7
19 1w7j:A 752 33 0.0329 0.0186 0.4242 4.2 7pm5:A, 7pm6:A, 7pm6:D, 7pm7:A, 7pm8:A, 7pm9:A, 7pma:A, 7pmb:A, 7pmc:A, 7pmd:A, 7pme:A, 7pme:D, 7pmf:A, 7pmg:A, 7pmh:A, 7pmi:A, 7pmj:A, 7pml:A, 1w7i:A
20 7v40:A 432 209 0.1080 0.1065 0.2201 4.7 7v41:A, 7v42:A, 7v43:A, 7v44:A, 7v45:A, 7v46:A
21 4v3p:SM 152 65 0.0352 0.0987 0.2308 5.8 8ip8:oa, 8ip9:oa, 8ipa:oa, 8ipb:oa, 8r57:S, 4v7e:BS

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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