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BioLiP
>protein
EIKGILESITGFSIPLDGEYALYPAGRHLRGAIGYIAFNLDLPISSKFLDFDFDDLPICGKIFYPIYGSSVLRNIMARGL
SYKEVIEGKKYRLSIIVKDEKYLNEMEAIIRYILSYGIYLGNKVSKGYGKFKIKEYSIVDILLSDAIIDEKDIVFSKKEI
SSSKFEIIRKRGKAK

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8z9e:G 175 175 1.0000 1.0000 1.0000 1.28e-120
2 8yhd:G 234 207 0.9943 0.7436 0.8406 1.20e-103 8yhe:G, 8z4j:G, 8z4l:G, 8z99:G, 8z9c:G
3 8yk9:D 165 45 0.0914 0.0970 0.3556 1.5 8yk9:B, 8yk9:C
4 7l7b:C 1166 93 0.1486 0.0223 0.2796 1.9
5 5u84:B 353 34 0.0629 0.0312 0.3235 3.7 5u84:A
6 7rcf:A 290 37 0.0629 0.0379 0.2973 5.0 7rcc:D, 7rcc:A, 7rcc:G, 7rcd:A, 7rce:A, 7rcg:A
7 4c91:A 811 84 0.1429 0.0308 0.2976 5.3
8 8gyj:B 428 38 0.0686 0.0280 0.3158 7.9 8gyi:A, 8gyi:B, 8gyj:A
9 7x5j:C 256 53 0.1143 0.0781 0.3774 8.5 7x5j:D, 7x5j:A, 7x5j:E, 7x5j:B, 7x5j:F
10 5u75:A 144 26 0.0686 0.0833 0.4615 9.4
11 6tmf:X 97 28 0.0743 0.1340 0.4643 9.7
12 8qca:A 805 46 0.0914 0.0199 0.3478 9.8 8qcf:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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