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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EIDNFLKIERLAENDLPKFIQLIRLFEAVFEMKNFSIPDSEHLQKLLNQNNFYVFVALLENKIVGGLTSYVLEQYYSEKP
LAYIYDLAVDTNWQRQGIGKKLITATNQFYTEKGFEEVFVQADKVDDYALDFYRSTKPTAEEQVVHFYYTLK

The query sequence (length=152) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5f47:B 152 152 1.0000 1.0000 1.0000 3.00e-110 5f47:A, 5f48:A, 5f48:B, 5f49:A, 5f49:B, 5f49:C, 5f49:D, 5u08:A, 5u08:B, 5u08:C, 5u08:D
2 6bvc:A 154 110 0.2763 0.2727 0.3818 1.57e-16 1bo4:A, 1bo4:B
3 5hmn:B 159 147 0.3158 0.3019 0.3265 7.59e-16 5hmn:A, 5hmn:C, 5hmn:E, 5hmn:F
4 3pp9:A 176 90 0.1711 0.1477 0.2889 4.63e-06 3pp9:B, 3pp9:C
5 7mx2:A 152 95 0.1513 0.1513 0.2421 0.001 7rb3:A
6 2bei:A 156 147 0.2237 0.2179 0.2313 0.006 2q4v:A
7 7pj3:AAA 273 101 0.2171 0.1209 0.3267 0.009 7pj4:AAA, 7pj5:AAA, 7pj6:AAA, 7pl3:A, 7pod:A
8 7l1k:A 149 104 0.1711 0.1745 0.2500 0.013
9 7wx5:A 288 113 0.2039 0.1076 0.2743 0.019 7wx6:A, 7wx7:A
10 2ob0:C 166 75 0.1316 0.1205 0.2667 0.038 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
11 9evq:B 214 100 0.1645 0.1168 0.2500 0.039 9evq:A, 9f5q:A, 9f5q:B
12 8iyo:D 163 126 0.1974 0.1840 0.2381 0.062 8iyo:A, 8iyo:B, 8iyo:C
13 7daj:B 150 70 0.1316 0.1333 0.2857 0.071 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
14 4pv6:G 154 72 0.1250 0.1234 0.2639 0.079 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
15 6q1r:B 284 139 0.1974 0.1056 0.2158 0.10 6q1r:A, 6q1r:C, 6q1r:D, 6q1s:A, 6q1s:B, 6q1s:C, 6q1s:D
16 7ovv:B 196 63 0.1250 0.0969 0.3016 0.40 7ovv:A
17 2cnm:A 151 130 0.1974 0.1987 0.2308 0.41 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
18 4ua3:B 193 108 0.1513 0.1192 0.2130 0.48 4ua3:A
19 5kf2:A 317 43 0.0921 0.0442 0.3256 0.55 5kf1:A, 5kf1:B, 5kf8:A, 5kf9:A, 5kga:A, 5kga:B, 5kgh:A, 5kgh:B, 5kgj:A, 5kgp:A, 5kgp:B
20 6z00:A 156 74 0.1184 0.1154 0.2432 0.74 6yzz:A, 6z00:B
21 8p0t:M 212 93 0.1513 0.1085 0.2473 0.87 8p0t:a
22 1qsm:D 152 101 0.1711 0.1711 0.2574 0.89 1qsm:A, 1qsm:B, 1qsm:C
23 1wwz:A 157 58 0.1184 0.1146 0.3103 0.94 1wwz:B
24 5us1:A 189 30 0.0658 0.0529 0.3333 1.1 7jzs:A, 5us1:B, 5us1:C, 5us1:D, 5us1:E, 5us1:F, 5us1:G, 5us1:H, 5us1:I, 5us1:K, 5us1:L, 6vou:A, 6vou:B, 6vr2:A, 6vr2:B, 6vr3:A, 6vr3:B, 6vta:A, 6vta:B
25 6ygb:A 159 52 0.0921 0.0881 0.2692 1.2 6ygc:A, 6ygd:A
26 5fok:A 656 38 0.1053 0.0244 0.4211 1.4 5fok:B
27 6d7j:A 799 81 0.1250 0.0238 0.2346 1.5 6d7j:D
28 2q0y:A 153 84 0.1250 0.1242 0.2262 1.6
29 3jb9:B 904 55 0.1250 0.0210 0.3455 2.2
30 7nac:n 425 29 0.0789 0.0282 0.4138 2.4 7btb:n, 6c0f:n, 6cb1:n, 6elz:n, 6em1:n, 6em3:n, 6em4:n, 6em5:n, 6ft6:n, 3jct:n, 6m62:n, 7ohq:n, 7ohr:n, 7ohs:n, 7ohv:n, 7ohw:n, 7r6q:n, 7r7a:n, 7u0h:n, 7uoo:n, 7uqb:n, 7uqz:n, 7v08:n, 8v83:n, 8v84:n, 8v87:n, 6ylx:n, 6yly:n, 5z3g:M
31 5gcn:A 166 91 0.1447 0.1325 0.2418 2.5 1m1d:A, 1m1d:C, 1pu9:A, 1pua:A, 1q2c:A, 1q2d:A, 1qsn:A, 1qsr:A
32 1i1d:D 161 23 0.0724 0.0683 0.4783 2.7 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
33 6o07:C 139 59 0.1250 0.1367 0.3220 2.7
34 5jph:B 144 52 0.0987 0.1042 0.2885 2.8 5jph:A, 5jph:C
35 2cy2:A 174 52 0.0855 0.0747 0.2500 3.0
36 6hd7:v 161 66 0.1382 0.1304 0.3182 3.9 4xnh:C, 4xpd:C, 4y49:C, 4y49:I, 4y49:O
37 3l2p:A 535 41 0.0921 0.0262 0.3415 6.7
38 8heh:B 147 44 0.0855 0.0884 0.2955 8.1 8heh:A
39 5vc7:A 544 22 0.0592 0.0165 0.4091 8.8 5vc7:C, 5vc7:D, 5vc7:E, 5vc7:F, 5vc7:G
40 7agj:A 731 55 0.1250 0.0260 0.3455 9.0 7agj:B
41 4ag7:A 165 116 0.1974 0.1818 0.2586 9.1 4ag7:B, 4ag9:A, 4ag9:B
42 1cf2:P 336 47 0.0987 0.0446 0.3191 9.4 1cf2:R, 1cf2:O, 1cf2:Q
43 6v3t:A 213 36 0.0855 0.0610 0.3611 9.4 6v3t:B, 6v3t:C, 6v3t:D, 6v3t:E, 6v3t:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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