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BioLiP
>protein
EHSIRELGIGLNFLKVSGMSYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESL
SSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKN

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vwb:A 116 116 1.0000 1.0000 1.0000 7.63e-80 3w2a:A, 3w3c:A
2 2ntz:A 183 115 0.4655 0.2951 0.4696 1.13e-25 2ntz:B, 1zx4:A
3 3mkw:B 115 36 0.1121 0.1130 0.3611 0.11 3mky:B, 3mkz:A, 3mkz:N, 3mkz:U
4 3hrd:G 292 37 0.1207 0.0479 0.3784 0.36 3hrd:C
5 8ai8:A 183 26 0.0948 0.0601 0.4231 3.8 8ai8:B, 8ai9:A, 8ai9:B, 8aib:A, 8aib:B, 7pka:A, 7pka:B
6 3jb9:B 904 69 0.1810 0.0232 0.3043 6.4
7 6sga:Fb 129 54 0.1207 0.1085 0.2593 8.8 7pua:Fb, 6sgb:Fb
8 5mm7:K 397 73 0.1724 0.0504 0.2740 9.0 5mm4:K
9 6lzy:A 454 24 0.0776 0.0198 0.3750 9.8 6lzx:A, 6lzx:B, 6lzy:B, 7vej:A, 7vej:B, 7vek:A, 7vek:B, 7vel:A, 7vel:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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