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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EGTLTATVRLATPADAPSIAKLIRELADFEELSHACVVTEEKLHSSLWKLPPFQGPTVLMLEVCQVFEPIVRSVVLKNPI
DDSAREGFRSPSTGTHTTVGFVLFFPNYSTFLAKGGYYIEDLYVRKPYRGTGLGTILLKSVVQQAKKLRAGRVEWCVLDW
NVNAIKFYEGLGAKVMPEWRICRLTGEALEACAL

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zkt:B 202 200 1.0000 0.9604 0.9700 3.85e-142 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
2 7ovv:B 196 195 0.4897 0.4847 0.4872 1.27e-62 7ovv:A
3 2b4b:B 170 186 0.2784 0.3176 0.2903 1.68e-18 2b3v:A, 2b4b:A, 2b4d:A, 2b4d:B, 2b58:A, 3bj7:A, 3bj7:B, 3bj7:C, 3bj7:D, 3bj8:A, 3bj8:B, 3bj8:C, 3bj8:D, 2fxf:A, 2fxf:B, 2jev:A, 2jev:B
4 2bei:A 156 187 0.2784 0.3462 0.2888 9.98e-16 2q4v:A
5 1qsm:D 152 168 0.2113 0.2697 0.2440 8.56e-07 1qsm:A, 1qsm:B, 1qsm:C
6 6z00:A 156 58 0.1134 0.1410 0.3793 3.38e-04 6yzz:A, 6z00:B
7 2jlm:F 180 85 0.1237 0.1333 0.2824 6.20e-04
8 3pp9:A 176 77 0.1289 0.1420 0.3247 0.001 3pp9:B, 3pp9:C
9 3f8k:A 131 54 0.1031 0.1527 0.3704 0.003
10 6yug:A 143 45 0.0876 0.1189 0.3778 0.008 6yug:B
11 1tiq:A 173 54 0.0876 0.0983 0.3148 0.017 1tiq:B
12 1i1d:D 161 55 0.0928 0.1118 0.3273 0.026 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
13 2ge3:A 164 45 0.0825 0.0976 0.3556 0.038 2ge3:B, 2ge3:C
14 8a9n:A 150 73 0.0979 0.1267 0.2603 0.048 8a9n:B, 8a9o:A, 8a9o:B
15 2j8m:A 171 104 0.1443 0.1637 0.2692 0.058 2bl1:A, 2j8m:B, 2j8r:A, 2j8r:B
16 6s3a:A 209 76 0.1289 0.1196 0.3289 0.18 6t3w:A
17 5jph:B 144 57 0.0979 0.1319 0.3333 0.21 5jph:A, 5jph:C
18 8h1r:D 789 40 0.0722 0.0177 0.3500 0.23 8h1r:A, 5iva:A
19 7emf:A 467 86 0.1237 0.0514 0.2791 0.24 7enj:A
20 3mgd:B 154 50 0.0773 0.0974 0.3000 0.30 3mgd:A
21 8q6u:B 166 45 0.0876 0.1024 0.3778 0.37 8q6u:A
22 4q35:A 758 40 0.0773 0.0198 0.3750 0.72
23 8uvx:A 222 66 0.0825 0.0721 0.2424 2.0 8uvk:A, 8uvk:B, 8uvx:B
24 5dwn:A 181 78 0.1082 0.1160 0.2692 2.3 5dwn:B, 5dwn:C, 5dwn:D
25 3dr8:A 173 66 0.0928 0.1040 0.2727 2.4 3dr8:B
26 3owc:A 172 47 0.0876 0.0988 0.3617 2.5 3owc:B
27 3x1l:G 152 41 0.0619 0.0789 0.2927 2.5 3x1l:F
28 7daj:B 150 60 0.0876 0.1133 0.2833 2.8 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
29 8iss:D 289 54 0.0979 0.0657 0.3519 2.8 8hmy:C, 8hmz:C
30 5kf2:A 317 98 0.1392 0.0852 0.2755 3.0 5kf1:A, 5kf1:B, 5kf8:A, 5kf9:A, 5kga:A, 5kga:B, 5kgh:A, 5kgh:B, 5kgj:A, 5kgp:A, 5kgp:B
31 7uxa:D 264 54 0.0979 0.0720 0.3519 3.4 7zrz:CP1
32 7mx2:A 152 58 0.1082 0.1382 0.3621 3.4 7rb3:A
33 2fiw:A 160 75 0.1134 0.1375 0.2933 3.7
34 7l1k:A 149 58 0.1082 0.1409 0.3621 3.8
35 2cy2:A 174 98 0.1546 0.1724 0.3061 3.8
36 4e2o:A 445 52 0.1082 0.0472 0.4038 4.0
37 7cs1:A 191 26 0.0619 0.0628 0.4615 4.0 7cs0:A, 7cs0:B, 7cs1:B, 7csi:A, 7csi:B, 7csj:A, 7csj:B
38 1yvk:A 152 59 0.0670 0.0855 0.2203 5.7 1yvk:B, 1yvk:C, 1yvk:D
39 2qos:C 173 43 0.0619 0.0694 0.2791 5.9 2ovd:A
40 6wqc:A 293 55 0.0876 0.0580 0.3091 6.6 6wqb:A
41 4oll:A 316 46 0.0722 0.0443 0.3043 8.1 4onu:A
42 8a22:Ae 242 29 0.0619 0.0496 0.4138 8.9 8apn:Ae, 8apo:Ae
43 5ib0:A 137 51 0.0825 0.1168 0.3137 8.9 5ib0:B, 5ib0:C, 5ib0:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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