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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EGRMQIDEQPGNAIGAAVEGFDHATASDADIDALKSTIYTKKIAVLKGQDLSPQQFLALGKRLGRPEAYYEPMYQHPEVT
EIFVSSNVPENGKQIGVPKTGKFWHADYQFMPDPFGITLIYPQVIPEKNRGTYFIDMGRAYDRLPEDLKKEISGTYCRHS
VRKYFKIRPHDVYRPISEIIEEVERKTPAVVQPTTFTHPMTGETVLYISEGFTVGIEDQDGKPLDEELLKRLFDATGQLD
ESFEHDNIHLQSFEQGDLLVWDNRSLIHRARHTTTPEPTVSYRVTVHDERKLHDGI

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6dch:A 296 296 1.0000 1.0000 1.0000 0.0 6l6w:A, 6l6x:A, 7scp:A, 6xn6:A, 6xo3:A, 6xoj:A, 6xpa:A
2 6l86:A 292 293 0.7432 0.7534 0.7509 4.02e-168 6l86:B, 6l86:C, 6l86:D
3 8kht:B 285 281 0.4324 0.4491 0.4555 1.57e-86 8kht:A
4 8kif:C 286 278 0.4223 0.4371 0.4496 1.46e-85 8kif:B, 8kif:A, 8kif:D
5 6edh:A 281 281 0.2703 0.2847 0.2847 6.18e-24 6edh:B, 1gqw:A, 1gqw:B, 1gy9:A, 1gy9:B, 1os7:A, 1os7:B, 1os7:C, 1os7:D
6 3v17:A 276 281 0.2297 0.2464 0.2420 1.06e-18 3v17:C, 3v17:B, 3v17:D
7 5j92:B 259 199 0.1824 0.2085 0.2714 1.19e-17 5j92:A, 5j92:C, 5j92:D
8 5bk9:A 289 276 0.2331 0.2388 0.2500 4.69e-16 5bk9:B, 5bkb:A, 5bkb:B, 5bkc:A, 5bkd:A, 5bkd:B, 6d0o:A, 6d0o:C, 6d0o:D, 6d3h:A, 6d3h:B, 6d3h:I, 6d3i:G, 6d3i:D, 6d3i:J, 6d3m:A, 6d3m:B, 6d3m:F, 6d3m:J
9 6d3h:M 287 275 0.2331 0.2404 0.2509 1.01e-15 6d3i:A
10 5bkc:B 264 273 0.2297 0.2576 0.2491 3.86e-15
11 5bke:E 255 259 0.2061 0.2392 0.2355 4.41e-13 5bke:F, 5bke:G
12 5bke:C 289 190 0.1689 0.1730 0.2632 5.09e-13 5bke:A, 5bke:B, 5bke:D
13 5vn6:A 273 274 0.2331 0.2527 0.2518 7.42e-13 5vn6:B
14 6d0o:B 267 286 0.2230 0.2472 0.2308 2.73e-12
15 6d3j:A 247 272 0.2095 0.2510 0.2279 4.49e-12
16 3swt:B 246 281 0.2162 0.2602 0.2278 3.14e-11 3swt:A
17 5keu:B 280 274 0.2162 0.2286 0.2336 1.12e-10 5keu:A
18 4j5i:E 250 242 0.1892 0.2240 0.2314 2.56e-09 4j5i:A, 4j5i:D, 4j5i:F, 4j5i:H
19 3r1j:A 246 213 0.1723 0.2073 0.2394 2.74e-09 3r1j:B
20 4j5i:B 285 269 0.2297 0.2386 0.2528 4.82e-09 4j5i:C, 4j5i:G
21 7qte:B 284 265 0.2027 0.2113 0.2264 1.29e-07 7qtd:A, 7qtd:B, 7qtd:C, 7qtd:D, 7qte:A, 7qtg:A, 7qtg:B
22 4y0e:H 308 263 0.1926 0.1851 0.2167 3.42e-07 4y0e:A, 4y0e:B, 4y0e:C, 4y0e:D, 4y0e:E, 4y0e:F, 4y0e:G
23 8evo:B 242 280 0.1959 0.2397 0.2071 4.25e-07 4cvy:A, 4cvy:B, 4cvy:C, 4cvy:D
24 1vz4:D 259 293 0.2331 0.2664 0.2355 1.16e-06 1oii:A, 1oii:B, 1oii:D, 1oij:A, 1oij:B, 1oik:A, 1oik:D, 1vz4:A
25 1oij:C 238 200 0.1622 0.2017 0.2400 9.17e-06 1oii:C, 1oij:D
26 8bqd:x 367 75 0.0743 0.0599 0.2933 0.72 8bqx:x
27 6hiv:DT 239 88 0.0642 0.0795 0.2159 3.2 6hiw:DT, 6hiz:DT, 7pua:DT, 7pub:DT
28 6f89:A 344 39 0.0574 0.0494 0.4359 3.3 6f87:A, 6f87:B, 6f87:C, 6f87:D, 6f89:B, 6f8y:A, 6f8y:B, 6f8y:C, 6f8y:D
29 2r5c:B 419 70 0.0642 0.0453 0.2714 5.7 2r5e:A, 2r5e:B, 1yiy:A, 1yiy:B
30 7zwc:c 303 65 0.0574 0.0561 0.2615 6.2 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
31 2wyh:A 905 74 0.0709 0.0232 0.2838 6.5 2wyh:B, 2wyi:A, 2wyi:B
32 6g21:A 504 33 0.0473 0.0278 0.4242 7.4 6g21:B
33 7mq8:SI 844 28 0.0372 0.0130 0.3929 8.2 7mq9:SI
34 7mqa:SI 803 28 0.0372 0.0137 0.3929 9.1
35 3lac:B 204 37 0.0439 0.0637 0.3514 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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