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BioLiP
>protein
EFTLKTRLLAALKGEPVDKVPVCSVTQTGIVELMDVVGAPWPEAHTNPELMAKLALANHELSGLEAVRLPYCLTVLVEAM
GCEINMGTKNRQPSVTGHPYPKDLEGAAVPADLLQRGRIPVVLEAIKIIREKVGPDVPIVGGMEGPVTVASDLVSVKSFM
KWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSVTVLHICGNV
NPILSDMADCGFEGLSVEEKIGSAKKGKEVIGTRARLVGNVSSPFTLLPGPVDKIKAEAKEALEGGIDVLAPGCGIAPMT
PLENVKALVAARDEFYA

The query sequence (length=337) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ay8:A 340 337 1.0000 0.9912 1.0000 0.0 4ay7:A, 4ay7:B, 4ay8:B
2 1r3q:A 357 353 0.2404 0.2269 0.2295 5.75e-09 2q71:A, 1r3s:A, 1r3t:A, 1r3v:A, 1r3w:A, 1r3y:A
3 2qtt:A 248 110 0.0920 0.1250 0.2818 0.32 2h8g:A, 2h8g:B, 3lgs:A, 3lgs:B, 3lgs:C, 3lgs:D, 2qtg:A, 2qtg:B, 2qtt:B
4 7b0n:F 460 72 0.0534 0.0391 0.2500 0.74 6gcs:B, 7o6y:B, 7o71:B, 6rfq:B, 6rfr:B, 6rfs:B, 6y79:B, 6yj4:F
5 5h5a:A 214 84 0.0920 0.1449 0.3690 0.88 5h5a:B, 5h5a:C, 5h5a:D
6 7yoj:A 867 29 0.0415 0.0161 0.4828 1.3
7 5jrj:A 306 110 0.0920 0.1013 0.2818 2.4
8 2am1:A 454 115 0.0801 0.0595 0.2348 2.6 2am2:A, 3zm5:A, 3zm6:A
9 3ndr:A 247 56 0.0593 0.0810 0.3571 4.9 3ndr:B, 3ndr:C, 3ndr:D, 3nug:A, 3nug:B, 3nug:C, 3nug:D, 3rwb:A, 3rwb:B, 3rwb:C, 3rwb:D
10 1geg:E 256 35 0.0386 0.0508 0.3714 5.0 1geg:A, 1geg:B, 1geg:C, 1geg:D, 1geg:F, 1geg:G, 1geg:H
11 1xmv:A 293 122 0.0920 0.1058 0.2541 7.2
12 1b74:A 252 61 0.0504 0.0675 0.2787 8.5
13 3cmv:G 1167 130 0.0979 0.0283 0.2538 8.5 3cmv:B, 3cmv:E
14 3cmv:G 1167 130 0.0979 0.0283 0.2538 8.5 3cmv:B, 3cmv:E
15 3stp:A 390 51 0.0445 0.0385 0.2941 9.4
16 4pee:C 446 119 0.0742 0.0561 0.2101 9.6 5hdr:A, 5hdr:B, 5hdr:C, 5hdr:D, 6hzy:A, 6hzy:B, 5i5r:A, 5i5r:B, 5i5r:C, 5i5r:D, 4j28:A, 4j28:B, 4jfs:A, 4jfs:B, 4jft:A, 4jft:B, 4jfu:A, 4jfu:B, 4jfv:A, 4jfv:B, 4jfv:C, 4jfv:D, 4jfw:A, 4jfw:B, 4jfw:C, 4jfw:D, 4jl1:A, 4jl1:B, 4jl2:A, 4jl2:B, 4pcs:A, 4pcs:B, 4pcs:C, 4pcs:D, 4pct:A, 4pct:B, 4pct:C, 4pct:D, 4pee:A, 4pee:B, 4pee:D, 4wsj:A, 4wsj:B, 4wsj:C, 4wsj:D, 4wsk:A, 4wsk:B, 4wsk:C, 2wvs:A, 2wvs:B, 2wvs:C, 2wvs:D, 2wvt:A, 2wvt:B, 2wvu:A, 2wvu:B, 2wvu:C, 2wvu:D, 2xib:A, 2xib:B, 2xib:C, 2xib:D, 2xii:A, 2xii:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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