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BioLiP
>protein
EFTFEIEEHLLTLSENEKGWTKEINRVSFNGAPAKFDIRAWSPDHTKMGKGITLSNEEFQTMVDAFK

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4g06:A 68 66 0.9851 0.9706 1.0000 7.18e-45 6jip:A, 6jiq:A, 5zkl:A
2 2ltt:A 74 62 0.6119 0.5541 0.6613 2.29e-25 2ltt:B
3 7u2a:B 442 34 0.2239 0.0339 0.4412 0.23 8ffy:A, 7u2a:A, 7u2b:A
4 1wle:B 469 34 0.2239 0.0320 0.4412 0.25 8ffy:B, 7tzb:A, 7tzb:B, 7u2b:B, 1wle:A
5 7y82:A 1341 61 0.2985 0.0149 0.3279 0.73
6 7y84:A 1242 61 0.2985 0.0161 0.3279 0.79 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
7 8d97:A 1600 61 0.2985 0.0125 0.3279 0.82
8 7y80:A 1218 61 0.2985 0.0164 0.3279 0.83 8gu6:A
9 6k3c:B 351 44 0.1940 0.0370 0.2955 0.99
10 8gna:A 1188 45 0.2388 0.0135 0.3556 1.1
11 8d8n:B 1256 45 0.2388 0.0127 0.3556 1.1 8d9e:B, 8d9i:B, 7y81:A
12 7y8t:A 1298 45 0.2388 0.0123 0.3556 1.1 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
13 7xss:B 1282 45 0.2388 0.0125 0.3556 1.1 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
14 6eu6:A 405 29 0.1493 0.0247 0.3448 1.3
15 6qgn:A 223 32 0.1642 0.0493 0.3438 2.3 6qgn:B, 6qgn:C, 6qgn:D, 5sym:A, 5sym:B
16 5hh3:C 393 67 0.2687 0.0458 0.2687 3.3 5hh3:A
17 1aqe:A 110 44 0.2239 0.1364 0.3409 4.8 1czj:A
18 7d4i:3B 242 20 0.1194 0.0331 0.4000 4.8 7aju:CB, 7d4i:3C, 7d5s:3C, 7d5t:3B, 7d5t:3C, 7d63:3C, 6ke6:3C, 6lqp:3C, 6lqq:3C, 6lqr:3C, 6lqs:3C, 6lqt:3C, 6lqu:3C, 6lqv:3C, 7suk:SD, 5wlc:SD, 6zqd:CA, 6zqd:CB
19 5jyx:B 109 20 0.1194 0.0734 0.4000 5.8 5jyx:A, 5jyx:E, 5jyx:C, 5jyx:J, 5jyx:D, 5jyx:H, 5jyx:F, 5jyx:O, 5jyx:G, 5jyx:L, 5jyx:I, 5jyx:K, 5jyx:M, 5jyx:N
20 2dq0:A 447 25 0.1493 0.0224 0.4000 5.8 2dq0:B, 2zr2:A, 2zr2:B
21 5vcm:B 358 37 0.1493 0.0279 0.2703 8.2 5vcm:A, 5vcs:A
22 7o0t:A 354 46 0.2239 0.0424 0.3261 8.9 7o0t:B, 7o0t:C, 7o0t:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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