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BioLiP
>protein
EFSVCDSVSVWVGDKTTATDIKGKEVMVLGEVNISVFKQYFFETKCRDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQA
AWRFIRIDTACVCVLSR

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zbn:B 99 97 0.9485 0.9293 0.9485 3.13e-60
2 1btg:B 109 104 0.9381 0.8349 0.8750 7.75e-60 1btg:C, 4eax:A, 4eax:B, 4eax:D, 4xpj:A, 4xpj:B, 4zbn:A
3 4gba:B 206 56 0.1443 0.0680 0.2500 2.6 4gba:A
4 5j7o:F 622 77 0.1856 0.0289 0.2338 4.1 5j7o:A, 5j7o:B, 5j7o:C, 5j7o:D, 5j7o:E, 5j7u:A, 5j7u:B, 5j7u:C, 5j7u:D, 5j7u:E, 5j7u:F, 5j7u:G, 5j7u:H, 5j7u:I, 5j7u:J, 5j7u:K, 5j7u:L
5 6hiv:CP 180 41 0.1443 0.0778 0.3415 4.2 6hiw:CP, 6hiy:CP, 7pua:CP, 7pub:CP, 6sga:CP, 6sgb:CP
6 7aor:j 180 41 0.1340 0.0722 0.3171 7.4
7 4bbo:A 113 32 0.1134 0.0973 0.3438 8.5 4bbo:B, 4bbo:C, 4bbo:D
8 5gkp:B 239 29 0.1134 0.0460 0.3793 8.7 5gkp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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