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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EFRPGDKVVLPPYGVGVVAGIAQRSVSGVSRAYYQVDFPGSRSKAYVPVEAPHSVGLRKALAPEEVPVILDLLKNGRMPL
PKQWAARHRKTSEILADGNPYRIAQMAGQLRAWEVERGLPDLDRQALRRAIHLLAEEVAQSLEITVQEAKRLFEEAWGEE
LN

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4xls:M 162 162 1.0000 1.0000 1.0000 6.18e-116 4xlr:M, 4xlr:N, 4xls:N
2 8hvr:H 158 154 0.2469 0.2532 0.2597 1.21e-14 8jke:H
3 6edt:M 159 154 0.2469 0.2516 0.2597 1.65e-13 6ee8:M, 6eec:M, 7kif:M, 7kin:M, 6vvx:M, 6vvy:M, 6vvz:M, 6vw0:M
4 7kim:M 135 105 0.1667 0.2000 0.2571 1.01e-05
5 6x2f:A 1144 68 0.1235 0.0175 0.2941 0.064 7ssg:A, 6x26:A, 6x2n:A, 6x43:A, 6x4w:A, 6x4y:A, 6x50:A
6 6xeo:A 1118 66 0.1235 0.0179 0.3030 0.065
7 6acx:A 1175 47 0.0926 0.0128 0.3191 0.084 6acx:B
8 8iff:A 868 113 0.1728 0.0323 0.2478 1.1 8f5z:B, 8f5z:A, 8iff:B, 8isj:A, 8isj:B
9 2d09:A 404 31 0.0926 0.0371 0.4839 4.0 2d0e:A, 5de9:A, 5de9:B, 1s1f:A, 1se6:A, 1se6:B, 1t93:A, 3tzo:A, 3tzo:B
10 3u33:A 540 49 0.1173 0.0352 0.3878 5.0 3djl:A, 3u33:B, 3u33:C, 3u33:D, 3u33:E, 3u33:F, 3u33:G, 3u33:H, 3u33:I, 3u33:J, 3u33:K, 3u33:L
11 4dy7:F 378 29 0.0617 0.0265 0.3448 5.2
12 5ysw:A 374 29 0.0802 0.0348 0.4483 6.3 5ysm:A
13 8aw5:A 266 23 0.0617 0.0376 0.4348 8.7 8aw5:B, 8aw5:C
14 7xp7:B 376 27 0.0679 0.0293 0.4074 9.7 7xp7:A, 7xp7:C, 7xp7:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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