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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EFLGDGGDVSFSTRGTQNWTVERLLQAHRQLEERGYVFVGYHGTFLEAAQSIVFGGVRARSQDLDAIWRGFYIAGDPALA
YGYAQDQEPDARGRIRNGALLRVYVPRSSLPGFYRTSLTLAAPEAAGEVERLIGHPLPLRLDAITGPEEEGGRLETILGW
PLAERTVVIPSAIPTDPRNVGGDLDPSSIPDKEQAISALPDYASQPG

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6edg:A 213 207 0.9758 0.9484 0.9758 1.79e-144 1aer:A, 1aer:B, 3b78:B, 3b78:D, 3b78:F, 3b82:B, 3b82:D, 3b82:F, 3b8h:B, 3b8h:D, 3b8h:F, 1dma:A, 1dma:B, 1xk9:A, 1xk9:B, 2zit:B, 2zit:D, 2zit:F, 1zm4:B, 1zm4:D, 1zm4:F, 1zm9:B, 1zm9:D, 1zm9:F
2 3q9o:A 605 199 0.3961 0.1355 0.4121 8.59e-37 3ess:A, 3ki0:A, 3ki1:A, 3ki2:A, 3ki3:A, 3ki4:A, 3ki5:A, 3ki6:A, 3ki7:A, 3ny6:A, 2q6m:A
3 9biw:B 528 135 0.1836 0.0720 0.2815 0.079 9biw:A
4 1ddt:A 523 135 0.1787 0.0707 0.2741 0.17 4ae1:A, 4ae1:B, 1dtp:A, 1f0l:A, 1f0l:B, 8g0g:A, 8g0g:B, 1mdt:A, 1mdt:B, 7o4w:A, 1tox:A, 1tox:B
5 3c49:A 357 63 0.0821 0.0476 0.2698 1.4 3c4h:A, 3ce0:A, 3fhb:A, 4gv0:A, 4gv2:A, 4gv4:A, 4l6z:A, 4l70:A, 4l7l:A, 4l7n:A, 4l7o:A, 4l7p:A, 4l7r:A, 4l7u:A
6 6hxs:A 248 52 0.0725 0.0605 0.2885 1.5 4f0d:A, 6hxr:A, 6hxr:B, 6hxs:B, 6hxs:C, 6w65:A, 6w65:B, 6w65:C
7 6vvo:A 448 79 0.0966 0.0446 0.2532 2.6
8 7dsu:B 420 64 0.0966 0.0476 0.3125 5.5 7dsu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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