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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EFDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQSQLNTLWPTVLRANNQQ
FWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKV
SYLVEVVACFAQDGSTLIDCTRDTCGANFIF

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1v9h:A 193 191 0.9895 0.9793 0.9895 1.01e-142 1j1f:A, 1j1g:A, 1uca:A, 1ucc:A, 1ucd:A
2 1iyb:A 208 200 0.3927 0.3606 0.3750 3.10e-41 1iyb:B
3 1vcz:A 204 187 0.3403 0.3186 0.3476 6.83e-30 1vd1:A, 1vd3:A
4 1sgl:A 206 188 0.2723 0.2524 0.2766 1.00e-12
5 3d3z:A 238 141 0.2251 0.1807 0.3050 2.13e-07
6 5u6k:E 191 87 0.1204 0.1204 0.2644 2.6 5u6k:A, 5u6k:B, 5u6k:C, 5u6k:D
7 4dw4:B 163 63 0.0838 0.0982 0.2540 2.6 4dvl:A, 4dvl:B, 4dvn:B, 4dvn:A, 4dw3:A, 4dw3:B, 4dw4:A, 4dw5:A, 4dw5:B, 4dw7:A, 4dw7:B, 4dwa:A, 4dwa:B, 4dwc:A
8 8c54:A 482 88 0.1204 0.0477 0.2614 4.4 8c54:B, 8c54:C, 8c54:D
9 8thc:A 479 49 0.0733 0.0292 0.2857 5.3 8thb:A, 8thd:A
10 7vmx:A 260 40 0.0733 0.0538 0.3500 5.4
11 6d4b:A 361 43 0.0838 0.0443 0.3721 9.1 6d4b:B, 6d4c:A, 6d4c:B, 5dn9:A, 5dn9:B
12 5juy:B 1234 44 0.0681 0.0105 0.2955 9.3 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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