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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EFDLDKDNYIKWAQPTDENAGQSPTLAILGPMDVTVFLWINRVVWLAAFDALAPYHETAVGVYSQIPRRPSSESATNRNL
NIAALHAQHGVWKRVLPQQVDQLRELMTALGLDPSDETENLSSPVGIGNVAAKNAFNALKNDGMNFLGYEGRKYNPRPWA
DYTGYEPVNTAFKVNNPSRWQPQLQAHNARRAGGGPGDLGIYVTQHFVTPQTARTKAHIFRDPSRFRIPRPEFSDHTNTR
AYKRSVDEIIDASANLNDERKALAEIMENKLWGIGHSSIVIANKYDQNNEMGVHGWCHWMLAHVLATFEPLIAAWHHKTR
FDAVRPVTAIRHVYGNRKIRAWGGVGMGTVDIRASEWSSYLPVGDHPEYPSGSTSLCSATSQAARRYFDSDELDWTINYP
AGSTVVEPGITPGKDLSIHIPTWTDFTRTCATSRVWGGVHFQTTVDRTIDFGEQFGDLAHEFVQRHVKGDV

The query sequence (length=471) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3w36:B 471 471 1.0000 1.0000 1.0000 0.0 3w36:A
2 4usz:A 415 308 0.1274 0.1446 0.1948 0.001 4cit:A
3 3glb:D 219 84 0.0510 0.1096 0.2857 0.081 2f7c:A, 3glb:A, 3glb:B, 3glb:C
4 3waq:A 134 55 0.0361 0.1269 0.3091 0.40 3agt:A, 3agt:B, 3agu:A, 3agu:B, 2avk:A, 2awc:A, 2awy:A, 2awy:B, 3whn:A, 3whn:B
5 8hi6:A 534 100 0.0594 0.0524 0.2800 0.54
6 5yym:A 581 84 0.0573 0.0465 0.3214 0.98 5b63:A, 4oby:A, 5yym:B, 5yyn:A
7 5b63:C 553 84 0.0616 0.0524 0.3452 1.0 5yyn:C
8 7v0b:A 539 160 0.0786 0.0686 0.2313 1.2 7v0b:B, 7v0b:C, 7v0b:D
9 7u0s:A 124 69 0.0403 0.1532 0.2754 1.9 5hwc:A, 6tz7:C, 7u0s:B, 7u0u:B, 6vcv:A, 6vcv:B
10 7njv:a 238 116 0.0616 0.1218 0.2500 4.0 8g07:a, 8g0a:a, 8g0b:a, 8g0e:a, 7jga:a, 7jgc:a
11 3bb0:A 576 93 0.0531 0.0434 0.2688 4.2 1vnc:A, 1vne:A, 1vnf:A, 1vng:A, 1vnh:A, 1vni:A, 1vns:A
12 2v6i:A 421 74 0.0403 0.0451 0.2568 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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