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BioLiP
>protein
EEYGYIVTDQKPLSLAAGVKLLEILAEHVHMSSGSFINISVVGPALTFRIRHNEQNLSLADVTQQAGLVKSELEAQTGLQ
ILQTGVGQR

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2qt7:B 91 89 1.0000 0.9780 1.0000 7.52e-61 3n01:B, 3ng8:B, 3np5:A, 3np5:D, 2qt7:A
2 5ero:A 301 43 0.1685 0.0498 0.3488 0.34 5ero:B, 5ero:C
3 7mq8:LN 671 41 0.1348 0.0179 0.2927 1.4 7mq9:LN, 7mqa:LN
4 3k1j:A 566 51 0.1573 0.0247 0.2745 2.5 3k1j:B
5 2d9l:A 134 38 0.1348 0.0896 0.3158 4.6 2olm:A
6 3tqk:A 341 32 0.1685 0.0440 0.4688 5.6
7 6oae:A 204 51 0.1236 0.0539 0.2157 6.4
8 4m1e:B 273 54 0.1685 0.0549 0.2778 9.2 4m1e:A, 4m1e:F, 4m1e:E, 4m1e:C, 4m1e:D
9 8tcw:A 282 62 0.1798 0.0567 0.2581 9.4 8dkg:A, 8dkg:B, 8dkg:C, 8dkg:D, 8dkg:E, 2gr9:A, 2gr9:B, 2gr9:C, 2gr9:D, 2gr9:E, 2gra:A, 2gra:B, 2gra:C, 2gra:D, 2gra:E, 2izz:A, 2izz:B, 2izz:C, 2izz:D, 2izz:E, 8tcu:A, 8tcu:B, 8tcu:C, 8tcu:D, 8tcu:E, 8tcv:B, 8tcw:B, 8tcw:C, 8tcw:D, 8tcw:E, 8tcx:A, 8tcx:B, 8tcx:C, 8tcx:D, 8tcy:A, 8tcy:B, 8tcy:C, 8tcy:D, 8tcz:A, 8tcz:B, 8td0:A, 8td0:B, 8td0:C, 8td0:D, 8td1:A, 8td1:B, 8td1:C, 8td1:D, 8td1:E, 8td2:A, 8td2:B, 8td2:C, 8td2:D, 8td2:E, 8td3:A, 8td3:B, 8td3:C, 8td3:D, 8td3:E, 8td4:A, 8td4:B, 8td4:C, 8td4:D, 8td4:E, 8td5:A, 8td5:B, 8td5:C, 8td5:D, 8td5:E, 8td6:A, 8td6:B, 8td6:C, 8td6:D, 8td6:E, 8td7:A, 8td7:B, 8td7:C, 8td7:D, 8td7:E, 8td8:A, 8td8:B, 8td8:C, 8td8:D, 8td8:E, 8td9:A, 8td9:B, 8td9:C, 8td9:D, 8td9:E, 8tdb:A, 8tdb:B, 8tdb:C, 8tdb:D, 8tdb:E, 8tdc:A, 8tdc:B, 8tdc:C, 8tdc:D, 8tdc:E, 8tdd:A, 8tdd:B, 8tdd:C, 8tdd:D, 5uat:C, 5uat:E, 5uau:A, 5uau:B, 5uau:C, 5uau:D, 5uau:E, 5uav:A, 5uav:B, 5uav:C, 5uav:D, 5uav:E, 8vre:A, 8vre:B, 8vre:C, 8vre:D, 8vre:E, 6xoz:A, 6xoz:B, 6xoz:C, 6xoz:D, 6xoz:E, 6xp0:A, 6xp0:B, 6xp0:C, 6xp0:D, 6xp0:E, 6xp1:A, 6xp1:B, 6xp2:A, 6xp2:E, 6xp3:A, 6xp3:B, 6xp3:C, 6xp3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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