Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHY
HQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLK
PDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIGG

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jig:B 195 195 1.0000 1.0000 1.0000 1.15e-147 3gze:B, 3gze:D
2 2jig:A 216 216 1.0000 0.9028 0.9028 1.21e-141 3gze:A, 3gze:C
3 5v7y:A 207 192 0.3487 0.3285 0.3542 1.33e-32 5hv0:A, 5hv0:B, 5hv4:A, 5iav:A, 5iav:B, 5iax:A, 5iax:B, 5v7y:B, 5v7y:D, 5v7y:C
4 6tp5:A 370 185 0.3077 0.1622 0.3243 1.39e-16 6tp5:B
5 6tp5:A 370 67 0.1026 0.0541 0.2985 2.1 6tp5:B
6 5c5u:B 190 185 0.3128 0.3211 0.3297 7.99e-16 5c5t:A, 5c5t:B, 5c5u:A
7 7aih:Al 264 162 0.1949 0.1439 0.2346 5.3 7am2:Al, 7ane:Al
8 3oig:A 260 44 0.0821 0.0615 0.3636 6.5 3oif:A, 3oif:D
9 3oa8:A 229 39 0.0564 0.0480 0.2821 6.7 3oa8:C, 3oa8:E, 3ocd:A, 3ocd:C
10 3ggl:A 161 54 0.0974 0.1180 0.3519 7.1 6oe2:A
11 8ajk:B 447 32 0.0564 0.0246 0.3438 8.0 8ajj:C, 8ajj:A, 8ajj:B, 8ajj:D, 8ajk:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218