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BioLiP
>protein
EETCFDKYTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIANRCHEGGQSYKIGDTWRRPHETGGYMLECVCLGNG
KGEWTCKPI

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2rkz:C 90 89 1.0000 0.9889 1.0000 6.49e-63 3cal:A, 3cal:C, 4pz5:A, 2rkz:A, 2rkz:B, 2rkz:D, 2rkz:E, 2rkz:F, 3zrz:A, 3zrz:B
2 1o9a:A 93 47 0.5281 0.5054 1.0000 9.08e-29
3 1o9a:A 93 89 0.3034 0.2903 0.3034 3.14e-06
4 2rky:C 92 89 0.4944 0.4783 0.4944 9.04e-24 2rky:A, 2rl0:A, 2rl0:B, 2rl0:D, 2rl0:F, 2rl0:K
5 2rl0:I 79 89 0.4719 0.5316 0.4719 1.91e-20
6 3ejh:A 91 81 0.3596 0.3516 0.3951 1.28e-13 3ejh:B, 3gxe:B, 3gxe:A
7 3ejh:A 91 41 0.1573 0.1538 0.3415 0.045 3ejh:B, 3gxe:B, 3gxe:A
8 3m7p:A 301 85 0.3146 0.0930 0.3294 9.09e-08
9 3m7p:A 301 81 0.3146 0.0930 0.3457 8.34e-07
10 3m7p:A 301 41 0.1573 0.0465 0.3415 0.11
11 7elh:B 1264 58 0.1798 0.0127 0.2759 0.48 1mwh:A, 1n1h:A, 1n35:A, 1n38:A, 1uon:A, 7yed:R, 7yfe:R
12 7og2:A 622 84 0.2360 0.0338 0.2500 3.3 7og2:B
13 4bed:A 1664 23 0.1011 0.0054 0.3913 5.7 4bed:C
14 3c4n:A 359 62 0.2022 0.0501 0.2903 8.9 3c4n:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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