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BioLiP
>protein
EEQKIKIYVTKRRFGKLMTIIEGFDTSVIDLKELAKKLKDICACGGTVKDNTIELQGDHRKKVAEELVKMGFSRDSIEIR

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5jb3:1 83 80 1.0000 0.9639 1.0000 4.60e-53 5jbh:1
2 5zcy:A 83 79 0.5250 0.5060 0.5316 2.12e-25
3 6gsm:m 96 82 0.3750 0.3125 0.3659 3.26e-05 8cah:m, 6gsn:m, 3j80:j, 3j81:m, 3jam:j, 3jap:m, 4uer:F, 6zce:m
4 7a09:Z 110 79 0.3500 0.2545 0.3544 2.95e-04 9bln:W, 4kzx:l, 4kzy:l, 8pj1:p, 8ppk:p, 8ppl:Ip, 7qp6:p, 8xxn:C1, 6ybw:p, 6zmw:p, 6zp4:Z, 6zvj:N
5 4bts:AF 89 85 0.3125 0.2809 0.2941 7.66e-04 4bts:BF, 4bts:CF, 4bts:DF, 4v5o:AF, 4v5o:BF
6 8s8f:m 77 69 0.3250 0.3377 0.3768 8.94e-04 8s8i:m
7 7ase:V 97 73 0.2250 0.1856 0.2466 0.004
8 4ayx:A 571 36 0.1875 0.0263 0.4167 0.54 4ayt:A, 4ayw:A, 7y48:B, 3zdq:A
9 6vpq:A 87 58 0.2500 0.2299 0.3448 0.56 6vpq:B, 6vpq:C, 6vpq:E, 6vpq:F, 5vyc:l1, 5vyc:l2, 5vyc:l3, 5vyc:l4, 5vyc:l5, 5vyc:l6
10 7w3u:A 343 55 0.1750 0.0408 0.2545 0.90 7w3r:A, 7w3u:B, 7w3u:C
11 4qsh:C 1081 52 0.2000 0.0148 0.3077 5.4 4qsh:A, 4qsh:D, 4qsh:B, 4qsk:A, 4qsk:B
12 1t10:A 556 22 0.1375 0.0198 0.5000 7.1
13 8tci:A 283 50 0.1750 0.0495 0.2800 7.4 8tci:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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