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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EEPGSGIGYPYDNNTLPYVAPGPTDSRAPCPALNALANHGYIPHDGRAISRETLQNAFLNHMGIANSVIELALTNAFVVC
EYVTGSDCGDSLVNLTLLAEPHAFEHDHSFSRKDYKQGVANSNDFIDNRNFDAETFQTSLDVVAGKTHFDYADMNEIRLQ
RESLSNELDFPGWFTESKPIQNVESGFIFALVSDFNLPDNDENPLVRIDWWKYWFTNESFPYHLGWHPPSPAREIEFVTS
ASSAVLAASVTSTPSSLPSGAIGPGAEAVPLSFASTMTPFLLATNAPYYAQDPTLGPND

The query sequence (length=299) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2civ:A 299 299 1.0000 1.0000 1.0000 0.0 2ciw:A, 2cix:A, 2ciy:A, 2ciz:A, 2cj0:A, 2cj1:A, 2cj2:A, 1cpo:A, 2cpo:A, 2j18:A, 2j19:A, 2j5m:A, 7rst:A
2 7zcl:B 227 234 0.2308 0.3040 0.2949 9.79e-17 7zcl:A
3 7o2d:A 228 215 0.2140 0.2807 0.2977 1.15e-15 7o1r:A, 7o1x:A, 7o1z:A, 7o2g:A
4 7zbp:A 239 214 0.1973 0.2469 0.2757 7.27e-15 5fuj:A, 5fuj:B, 5fuk:A, 5fuk:B, 7zbp:B, 7zbp:C, 7zbp:D
5 8iag:B 223 216 0.2040 0.2735 0.2824 3.68e-14 8iag:A
6 7znw:C 235 213 0.1806 0.2298 0.2535 8.06e-14 7znm:A, 7znm:B, 7znv:A, 7znw:A
7 5oxt:A 327 154 0.1405 0.1284 0.2727 1.74e-04 8av5:A, 6ekw:A, 6ekx:A, 6eky:A, 6ekz:A, 6el0:A, 6el4:A, 5oxt:B, 5oxt:C, 5oxu:A, 5oy1:A, 5oy2:A, 7pn4:A, 7pn5:A, 7pn6:A, 7pn7:A, 7pn8:A, 7pn9:A, 7pna:A, 2yor:B, 2yor:A, 2yp1:A, 2yp1:B, 2yp1:C, 2yp1:D
8 5zcl:A 312 41 0.0535 0.0513 0.3902 0.21 5gwo:A, 5gwo:B, 5gwp:A, 5gwp:B, 5zcg:A, 5zcg:B, 5zch:A, 5zch:B, 5zcl:B, 5zcu:A, 5zcu:B
9 8b80:A 474 68 0.0803 0.0506 0.3529 1.3 8b81:A, 8b81:B, 5okb:B, 5okb:C, 5okb:D, 5oke:C, 5oke:D, 5oke:A, 5oke:B, 5okg:C, 5okg:D, 5okg:A, 5okg:B, 5okk:A, 5okk:B, 5okq:A, 5okq:B, 5okr:A, 5okr:B, 5oks:A, 5oks:B, 4zen:A, 4zen:B, 4zep:A, 4zep:B, 4zfm:D, 4zfm:A, 4zfm:B, 4zfm:C
10 4rk6:A 270 48 0.0502 0.0556 0.3125 2.4 4rk6:B, 4rk7:A, 4rk7:B
11 7te8:C 119 25 0.0368 0.0924 0.4400 4.3 7te8:D
12 8dtn:A 117 24 0.0268 0.0684 0.3333 4.6 8dtn:C, 8dtn:G
13 5lui:A 264 69 0.0870 0.0985 0.3768 4.7 5luk:A, 5lul:A, 7xtt:B, 7xtv:A, 7xtv:B
14 7l1y:A 244 88 0.0736 0.0902 0.2500 5.5
15 5vl2:B 126 18 0.0301 0.0714 0.5000 5.9 5vl2:A, 5vl2:C, 5vl2:D, 5vl2:E, 5vl2:F, 5vl2:G, 5vl2:H
16 5jc8:D 262 59 0.0635 0.0725 0.3220 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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