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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EELVLLERTLEQIIFSSAGDVNVYDLQALCDKVGWPRRPLTKIAASLRNSYLVATLHSVTKQLIGMARATSDHAFNATIW
DVLVDPSYQGQGLGKALMEKVIRTLLQRDISNITLFADNKVVDFYKNLGFEADPQGIKGMFWYPRF

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7daj:B 150 148 1.0000 0.9733 0.9865 3.10e-106 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
2 3s6f:A 143 99 0.2123 0.2168 0.3131 2.39e-06
3 1i1d:D 161 73 0.1575 0.1429 0.3151 1.08e-05 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
4 2cnm:A 151 57 0.1301 0.1258 0.3333 2.34e-04 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
5 2cy2:A 174 81 0.1507 0.1264 0.2716 3.96e-04
6 1tiq:A 173 97 0.1781 0.1503 0.2680 6.95e-04 1tiq:B
7 2bei:A 156 52 0.1233 0.1154 0.3462 0.001 2q4v:A
8 8iyo:D 163 72 0.1370 0.1227 0.2778 0.004 8iyo:A, 8iyo:B, 8iyo:C
9 8heh:B 147 54 0.1233 0.1224 0.3333 0.005 8heh:A
10 3d8p:A 158 89 0.1712 0.1582 0.2809 0.007
11 7wx5:A 288 58 0.1301 0.0660 0.3276 0.011 7wx6:A, 7wx7:A
12 2q0y:A 153 52 0.1096 0.1046 0.3077 0.012
13 4my0:C 392 55 0.1233 0.0459 0.3273 0.020 4my0:A, 4my0:E, 4my0:B, 4my0:D, 4my0:F
14 6wqc:A 293 116 0.1918 0.0956 0.2414 0.043 6wqb:A
15 5f47:B 152 70 0.1370 0.1316 0.2857 0.072 5f47:A, 5f48:A, 5f48:B, 5f49:A, 5f49:B, 5f49:C, 5f49:D, 5u08:A, 5u08:B, 5u08:C, 5u08:D
16 5jph:B 144 69 0.1370 0.1389 0.2899 0.078 5jph:A, 5jph:C
17 3mgd:B 154 53 0.0890 0.0844 0.2453 0.10 3mgd:A
18 6vfn:A 167 85 0.1370 0.1198 0.2353 0.11 6vfn:F, 6vfn:B, 6vfn:C, 6vfn:D, 6vfn:E, 6vfn:H, 6vfn:I, 6vfn:J, 6vfn:G, 6vfn:L, 6vfn:K
19 7koe:B 336 71 0.1507 0.0655 0.3099 0.11 7koe:F
20 4ag7:A 165 109 0.1575 0.1394 0.2110 0.19 4ag7:B, 4ag9:A, 4ag9:B
21 3pp9:A 176 81 0.1644 0.1364 0.2963 0.20 3pp9:B, 3pp9:C
22 5wje:A 159 112 0.2055 0.1887 0.2679 0.22 5wjd:A
23 6g96:A 175 58 0.1575 0.1314 0.3966 0.25 7ak9:A, 7ak9:B, 6g96:B, 7zg5:A, 7zg5:B
24 5t7e:D 175 97 0.1781 0.1486 0.2680 0.30 5t7d:A, 5t7d:B, 5t7d:C, 5t7d:D, 5t7e:A, 5t7e:B, 5t7e:C
25 7k0a:A 196 49 0.0959 0.0714 0.2857 0.35 7k09:A, 7k09:B, 7k09:C, 7k09:D, 7k09:E, 7k09:F, 7k0a:B
26 3gy9:A 149 77 0.1644 0.1611 0.3117 0.36 3gya:A
27 1cm0:A 162 50 0.0959 0.0864 0.2800 0.43 1cm0:B, 4nsq:A, 4nsq:B, 4nsq:C, 4nsq:D
28 5yge:A 169 52 0.1027 0.0888 0.2885 0.50 6add:A, 6add:B, 5yge:B, 5yo2:A, 5yo2:B
29 3exn:A 154 80 0.1438 0.1364 0.2625 0.57
30 2ge3:A 164 48 0.1027 0.0915 0.3125 0.59 2ge3:B, 2ge3:C
31 6d72:B 176 66 0.1164 0.0966 0.2576 0.78 6d72:A
32 4pv6:G 154 78 0.1164 0.1104 0.2179 0.79 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
33 1ghe:B 171 56 0.1096 0.0936 0.2857 0.85 1ghe:A, 1j4j:A, 1j4j:B
34 5ib0:A 137 35 0.0753 0.0803 0.3143 0.91 5ib0:B, 5ib0:C, 5ib0:G
35 3dr8:A 173 21 0.0685 0.0578 0.4762 1.0 3dr8:B
36 5gcn:A 166 57 0.1027 0.0904 0.2632 1.2 1m1d:A, 1m1d:C, 1pu9:A, 1pua:A, 1q2c:A, 1q2d:A, 1qsn:A, 1qsr:A
37 3wr7:A 170 74 0.1164 0.1000 0.2297 1.3 4r9m:A, 3wr7:C, 3wr7:B, 3wr7:D
38 3cxq:A 182 87 0.1644 0.1319 0.2759 1.7 2o28:A, 2o28:B
39 6axe:A 729 55 0.1096 0.0219 0.2909 1.7 6axe:B
40 4jxr:B 185 78 0.1507 0.1189 0.2821 2.2
41 8rzg:A 659 98 0.1712 0.0379 0.2551 2.6 8rzg:B, 8rzg:C, 8rzg:D, 8rzh:A, 8rzh:B, 8rzh:C, 8rzh:D, 8rzi:A, 8rzi:B, 8rzi:C, 8rzi:D, 8rzj:A, 8rzj:B, 8rzj:C, 8rzj:D, 8rzk:A, 8rzk:B, 8rzk:C, 8rzk:D
42 7zkt:B 202 60 0.1164 0.0842 0.2833 2.7 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
43 2ozg:A 388 55 0.1027 0.0387 0.2727 3.4
44 1z72:B 215 48 0.1164 0.0791 0.3542 3.5
45 2pr1:A 152 21 0.0685 0.0658 0.4762 3.8 2pr1:B
46 5xxr:A 123 36 0.0822 0.0976 0.3333 4.2 5xxr:B, 5xxs:A, 5xxs:B
47 5h86:A 167 45 0.0822 0.0719 0.2667 4.4 8e6o:A, 8e6o:B, 8e6o:C, 8h65:C, 8h65:D, 8h65:E, 8h65:F, 8h65:B, 8h65:A, 8h65:G, 8h65:H, 8h66:E, 8h66:C, 8h66:D, 8h66:F, 8h66:B, 8h66:A, 8h66:G, 8h66:H, 8h6c:C, 8h6c:D, 8h6c:E, 8h6c:F, 8h6c:B, 8h6c:A, 8h6c:G, 8h6c:H, 8h6d:C, 8h6d:D, 8h6d:E, 8h6d:F, 8h6d:B, 8h6d:A, 8h6d:G, 8h6d:H, 5h84:A, 5trl:C, 5trl:D, 5trl:E, 5trl:F, 5trl:B, 5trl:A, 5trl:G, 5trl:H, 1z4r:A
48 6o9l:A 1476 86 0.1644 0.0163 0.2791 5.2 8a40:A, 8bvw:A, 8byq:A, 8bz1:A, 7edx:o, 7eg7:o, 7eg8:o, 7eg9:o, 7ega:o, 7egb:o, 7egc:o, 6exv:A, 5flm:A, 5iy6:A, 5iy7:A, 5iy8:A, 5iy9:A, 5iya:A, 5iyb:A, 5iyc:A, 5iyd:A, 7nvr:A, 7nvs:A, 7nvt:A, 7nvu:A, 7nvy:A, 7nvz:A, 7nw0:A, 8s5n:A, 8wak:o, 8wal:o, 8wan:o, 8wao:o, 8wap:o, 8waq:o, 8war:o, 8was:o, 8wat:o, 8wau:o, 8wav:o, 8waw:o, 8wax:o, 8way:o, 8waz:o, 8wb0:o, 6xre:A, 7zwd:A, 7zx7:A, 7zx8:A
49 8a3y:A 1426 86 0.1644 0.0168 0.2791 5.4 8oeu:A, 8oev:A, 8oew:A, 8of0:A, 7okx:A, 7oky:A, 7ol0:A, 7pks:A, 8rbx:A, 6ted:A, 8uhg:A, 8ui0:A, 7unc:A, 7und:A
50 7ena:PA 1475 86 0.1644 0.0163 0.2791 5.4 7b0y:A, 8b3d:A, 8b3f:A, 7enc:PA, 6gmh:A, 6gml:A, 8gxq:PA, 8gxs:PA, 7lbm:A, 5oik:A, 7oo3:A, 7oob:A, 7oop:A, 7opc:A, 7opd:A, 8p4a:A, 8p4b:A, 8p4c:A, 8p4d:A, 8p4e:A, 8p4f:A, 8s51:A, 8s52:A, 8s54:A, 8s55:A, 8uha:A, 8uhd:A, 8uis:A, 8w8e:A, 8w8f:A, 7ycx:1
51 6sc6:A 365 23 0.0753 0.0301 0.4783 6.2 5edv:A, 5edv:B, 6gzy:A, 6gzy:B, 6kc5:B, 6kc6:A, 6kc6:C, 6kc6:E, 6kc6:G, 6kc6:I, 6kc6:K, 4ljo:A, 4ljp:A, 4ljq:B, 4ljq:C, 4ljq:A, 4ljq:D, 6sc5:A, 6sc7:A, 6sc8:A, 6sc9:A, 7v8f:B, 7v8g:D, 7v8g:C
52 4rs2:B 183 48 0.0959 0.0765 0.2917 7.2 4rs2:A
53 7crc:B 1112 61 0.1164 0.0153 0.2787 8.2 7crc:A, 7crc:C, 7crc:D, 7xoz:A, 7xoz:B
54 5uxa:A 301 76 0.1370 0.0664 0.2632 8.8 5igv:A, 5igw:A, 5igy:A, 5igz:A, 5ih0:A, 5ih1:A, 5iwu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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