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BioLiP
>protein
EELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYN
VAKDAEISGKYENGVLTIR

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vqm:A 111 99 1.0000 0.8919 1.0000 5.63e-67 3vqm:B, 3vqm:C, 3vqm:E, 3vqm:F, 3vqm:I, 3vqm:K, 3vqm:M, 3vqm:N
2 4yl9:D 123 99 0.6970 0.5610 0.6970 8.35e-45
3 5zs3:A 113 89 0.2626 0.2301 0.2921 0.001 5zs6:A
4 3gla:B 99 91 0.2626 0.2626 0.2857 0.52 3gla:A
5 7smk:A 455 27 0.1010 0.0220 0.3704 1.9 7snv:A
6 3atg:A 242 43 0.1313 0.0537 0.3023 2.0
7 8cmy:C 445 27 0.1010 0.0225 0.3704 3.2 8cmy:M, 8cmy:G, 8cmy:I, 8cmy:K, 8cmy:O, 7yyo:A, 7yyo:C, 7yyo:E, 7yyo:G, 7yyo:I, 7yyo:K, 7yyo:M, 7yyo:O
8 3aek:A 415 33 0.1313 0.0313 0.3939 5.2 3aek:C, 3aeq:A, 3aeq:C, 3aer:A, 3aer:C, 3aes:A, 3aes:C, 3aet:A, 3aet:C, 3aeu:A, 3aeu:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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