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BioLiP
>protein
EELSGTKVSAPYYTLEYHNAMVVGTEEAGSAGVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSLDELRPFQD
PDLSSLQAGSACLAKHQDGLWHAARITDVDNGYYTVKFDSLLLREAVVEGDGILPP

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ii1:B 139 139 1.0000 0.9784 0.9784 4.62e-97 4ii1:A, 4ii1:C, 4ii1:D
2 8y6o:V 101 31 0.1176 0.1584 0.5161 0.009
3 8dil:A 175 117 0.2206 0.1714 0.2564 0.14 8dil:B, 8dil:C, 8dil:D, 8dil:E, 8dil:F
4 7abi:P 237 77 0.1397 0.0802 0.2468 0.24 7aav:P, 7abg:P
5 8ch6:U 295 102 0.1691 0.0780 0.2255 0.43 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
6 1m9o:A 40 23 0.0809 0.2750 0.4783 1.3
7 3bm1:A 177 81 0.1691 0.1299 0.2840 1.4 3bm1:B
8 3mco:A 397 69 0.1471 0.0504 0.2899 1.5 3mcn:B, 3mco:B
9 7jgr:D 441 58 0.1471 0.0454 0.3448 1.6 7jgs:D, 7jk2:D, 7jk3:D, 7jk4:D, 7jk5:D, 7jk6:D
10 7mp9:A 414 64 0.1544 0.0507 0.3281 2.1 8uct:A, 8udc:A
11 6uej:A 212 82 0.1544 0.0991 0.2561 2.3 6uei:A
12 4cs7:C 172 21 0.0588 0.0465 0.3810 2.3 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
13 3omc:A 217 23 0.0735 0.0461 0.4348 3.1 5m9o:A, 3omc:B, 3omg:A, 3omg:B
14 5gpc:A 190 113 0.1985 0.1421 0.2389 3.1 5gpc:B, 5gpc:C, 5gpc:D
15 6n9l:A 625 54 0.1029 0.0224 0.2593 3.7
16 3dpm:A 522 54 0.1103 0.0287 0.2778 4.4 3dpm:B
17 8ro0:O 342 43 0.0956 0.0380 0.3023 4.6 8ro1:O
18 1rgo:A 70 28 0.0882 0.1714 0.4286 6.9
19 4c3b:C 178 21 0.0662 0.0506 0.4286 7.0 4c3b:A, 4c3b:B, 4c3b:D, 4c3b:E, 4c3b:F, 4c3b:G, 4c3b:H, 4c3b:I, 4c3b:J, 4c3b:K, 4c3b:L, 4c3b:M, 4c3b:N, 4c3b:O, 4c3b:P, 4c3e:A, 4c3e:B, 4c3e:C, 4c3e:D, 4c3e:E, 4c3e:F, 4c3e:G, 4c3e:H, 4c3e:I, 4c3e:J, 4c3e:K, 4c3e:L, 4c3e:M, 4c3e:N, 4c3e:O, 4c3e:P, 6g0y:F, 6g0y:E, 6g0y:A, 6g0y:C, 6pzq:B, 6pzq:D
20 2j5z:A 214 86 0.1618 0.1028 0.2558 7.5 2j5z:B, 2j5z:C, 2j60:A, 2j60:B, 2j60:C, 2j64:A, 2j64:B, 2j64:C
21 1zca:A 318 47 0.1029 0.0440 0.2979 7.7 1zca:B
22 6pzq:A 157 21 0.0662 0.0573 0.4286 7.8 6pzq:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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