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BioLiP
>protein
EEKYYMDADLLREIKQHLKQQQEGLSHLMSIIKDDLEDIKLV

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4j3h:A 42 42 1.0000 1.0000 1.0000 1.72e-23 4j3h:B
2 6rft:A 406 28 0.2857 0.0296 0.4286 0.090 6rft:B, 6rft:C, 6rft:D, 6rft:E, 6rft:F, 6rfx:D, 6rfx:A, 6rfx:B, 6rfx:C, 6rfx:E
3 3fkq:A 354 23 0.2381 0.0282 0.4348 1.1
4 8d8k:T 92 36 0.2381 0.1087 0.2778 6.6 8d8l:T, 5mrc:TT, 5mre:TT, 5mrf:TT, 8om2:T, 8om3:T, 8om4:T
5 3eh1:A 737 25 0.2381 0.0136 0.4000 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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