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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EEEQYFKTNPKPAYIDELIKDAKEFIDLQYSLKRNKIVLITSGGTTVPLENNTVRFIDNFSAGTRGASSAEQFLANGYSV
IFLHREFSLTPYNRSFSHSINTLFLDYIDSEGKIKPEFAENVLKNKKLYDKYMEKEEKLLLLPFTTVNQYLWSLKSIAKL
LNNSGCLFYLAAAVSDFFVPYSRLPQHKIQEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMIVSFKLETDESMLLY
KCTQALDRYNHQLVIGNLLQTRNKQVIFVSPENRKGDWVRLDEKHASIEEMIIPEVIARHDKWVAHSKT

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ai9:B 311 309 1.0000 0.9936 1.0000 0.0 6ai9:A, 6aik:A, 6aik:B, 6aim:A, 6aim:B, 6aip:A, 6aip:B
2 7edz:B 306 280 0.3657 0.3693 0.4036 1.11e-59 7edz:D, 7edz:C, 7edz:A
3 8owr:B 229 46 0.0583 0.0786 0.3913 0.28 6th2:B, 6th2:D
4 6tgv:C 389 56 0.0680 0.0540 0.3750 0.44 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
5 3db7:A 127 97 0.0680 0.1654 0.2165 0.55
6 2yri:A 352 120 0.0906 0.0795 0.2333 0.72 2yri:B, 2yrr:A, 2yrr:B
7 4nes:A 362 117 0.0906 0.0773 0.2393 0.75
8 3vx4:D 240 67 0.0583 0.0750 0.2687 3.4 3vx4:A
9 8h67:E 299 101 0.0841 0.0870 0.2574 6.2 8h67:F, 8h67:G, 8h67:H, 8h67:J, 8h67:I, 8h7q:C, 8h7q:E, 8h7q:F, 8h7q:G, 8h7q:H, 8h7q:I, 8ip0:B, 8ip0:C, 8ip0:D, 8ip0:N, 8ip0:H, 8ip0:I
10 7ojl:L 1498 141 0.1036 0.0214 0.2270 6.4
11 2irf:H 109 51 0.0388 0.1101 0.2353 7.2 2irf:I, 2irf:J, 2irf:K, 2irf:L, 2irf:G
12 3t0u:B 668 58 0.0453 0.0210 0.2414 8.1 1a2v:A, 1a2v:B, 1a2v:C, 1a2v:F, 1a2v:E, 1a2v:D, 1ekm:A, 1ekm:B, 1ekm:C, 4ev2:A, 4ev2:B, 4ev2:C, 4ev2:D, 4ev2:E, 4ev2:F, 4ev5:A, 4ev5:B, 4ev5:C, 4ev5:D, 4ev5:E, 4ev5:F, 4kfd:A, 4kfd:B, 4kfd:C, 4kfd:D, 4kfd:E, 4kfd:F, 4kfe:A, 4kfe:B, 4kfe:C, 4kfe:D, 4kfe:E, 4kfe:F, 4kff:A, 4kff:B, 4kff:C, 3n9h:A, 3n9h:B, 3n9h:C, 3n9h:D, 3n9h:E, 3n9h:F, 3nbb:A, 3nbb:B, 3nbb:C, 3nbb:D, 3nbb:E, 3nbb:F, 3nbj:A, 3nbj:B, 3nbj:C, 3nbj:D, 3nbj:E, 3nbj:F, 2oov:A, 2oov:B, 2oov:C, 2oov:D, 2oov:E, 2oov:F, 2oqe:A, 2oqe:B, 2oqe:C, 2oqe:D, 2oqe:E, 2oqe:F, 3sxx:A, 3sxx:B, 3sxx:C, 3sxx:D, 3sxx:E, 3sxx:F, 3t0u:A, 3t0u:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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