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BioLiP
>protein
EEEKRRVRRERNKLAAAKCRNRRRELTDRLQAETDQLEEEKAELESEIAELQKEKERLEFVLVA

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vpe:A 67 64 1.0000 0.9552 1.0000 4.35e-36 5vpe:C, 5vpf:A, 5vpf:C
2 2wt7:A 63 62 0.7656 0.7778 0.7903 1.83e-28 1a02:F, 1fos:E, 1fos:G, 1s9k:D
3 1t2k:D 61 61 0.3125 0.3279 0.3279 0.015
4 5vpe:D 67 44 0.2656 0.2537 0.3864 0.015 5vpe:B, 5vpf:B, 5vpf:D
5 7x5e:B 106 43 0.2812 0.1698 0.4186 0.039 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
6 2dq0:A 447 52 0.3125 0.0447 0.3846 0.064 2dq0:B, 2zr2:A, 2zr2:B
7 5t01:A 62 39 0.2344 0.2419 0.3846 0.58 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
8 1skn:P 74 23 0.1719 0.1486 0.4783 2.0
9 7q1s:E 30 26 0.2031 0.4333 0.5000 2.1 7q1s:M, 7q1s:A
10 7elt:A 330 50 0.2344 0.0455 0.3000 2.4 7ens:A, 7ent:A, 7ev2:A, 7ev3:A
11 7x5e:E 101 57 0.2812 0.1782 0.3158 5.6 3a5t:A, 3a5t:B, 7x5e:A, 7x5f:A, 7x5f:E, 7x5g:A, 7x5g:E
12 8k8c:A 60 53 0.2500 0.2667 0.3019 6.3 8k8c:B, 1nwq:A, 1nwq:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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