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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EDWKALAADVRSEFQWAWQGYVAKAWGKDEINPVSGTSRSFFIEGHDLGLSLVEALDTLWIMGLDAEFQAGVDWVKANLS
FDVDGNAQVFETNIRLVGGLLSAHLASGDPVLLAKARDLADRLAKAFEASPHGLPWRYVNLRTGAVSDPETNLAEIGTYL
SEFGVLSQLTGERKYFDMAKRAMRHTLDRRSKIGLMAANIHAMTGAFTSRNASIDVYADSFYEYLWDAWALFGDEDCKRW
AVECVDAQLAHQAKRYDGRLWFPMVDFETGAVTGTAQSELAAYYAGLLGQVGRKAQGDDYLASFTYLQATFGVIPESIDV
TTGQPRRKHTGLRPEYPDACLNLWLIDRDPRYRRLAAIHYREMKATSRAAFGYTALKDITTRPMTQDDNCPGYWWSEQMK
YYYLLFSDTPRIDYGQLQLSTEANVLRGFRKV

The query sequence (length=432) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5meh:A 438 432 1.0000 0.9863 1.0000 0.0 4ayp:A, 4ayq:A, 4ayr:A, 8b5m:A, 5ne5:A
2 5kkb:A 469 444 0.3032 0.2793 0.2950 2.38e-55 5kkb:B, 1nxc:A
3 1fo2:A 456 427 0.3056 0.2895 0.3091 2.79e-48 1fo3:A, 5kij:A, 5kk7:A, 5kk7:B, 1x9d:A
4 1g6i:A 510 486 0.3056 0.2588 0.2716 2.35e-39
5 1kkt:A 475 246 0.1852 0.1684 0.3252 4.21e-20 1kre:B, 1kre:A, 1krf:A, 1krf:B, 2ri9:A, 2ri9:B
6 3gr3:A 226 89 0.0671 0.1283 0.3258 0.59 3gr3:B
7 7f82:A 338 91 0.0648 0.0828 0.3077 0.84 7f82:B, 7f82:C, 7f82:D
8 6sl5:O 86 61 0.0440 0.2209 0.3115 1.1
9 3vm5:A 499 48 0.0370 0.0321 0.3333 1.7
10 8c29:R 219 74 0.0417 0.0822 0.2432 3.0 8c29:r
11 5agd:B 344 192 0.1088 0.1366 0.2448 4.0 5agd:A, 4boj:A, 4boj:B, 4boj:C, 4d4b:A, 4d4b:B, 4d4c:A, 4d4c:B, 4d4d:A, 4d4d:B, 5m77:A, 5m77:B, 5n0f:A, 5n0f:B, 7nl5:A, 6zbm:A, 6zbw:A, 6zbw:B, 6zbx:A, 6zbx:B
12 3zhw:A 154 51 0.0417 0.1169 0.3529 7.2 3zhw:B
13 7bvc:B 1063 16 0.0185 0.0075 0.5000 8.8 7bvg:B, 7bwr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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