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BioLiP
>protein
EDVEALKTIKRWLEEIRRYLAVRPEDLGTGLLEALLRGDLAGAEALFRRGLRFWGPEGVLEHLLLPVLREVGEAWHRGEI
GVAEEHLASTFLRARLQELLDLAGFPPGPPVLVTTPPGERHEIGAMLAAYHLRRKGVPALYLGPDTPLPDLRALARRLGA
GAVVLSAVLSEPLRALPDGALKDLAPRVFLGGQGAGPEEARRLGAEYMEDLKGLAEALW

The query sequence (length=219) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5c8d:E 280 228 1.0000 0.7821 0.9605 9.09e-144 8c31:A, 8c31:B, 8c31:C, 8c31:D, 8c32:A, 8c32:B, 8c32:C, 8c32:D, 8c33:A, 8c33:B, 8c33:C, 8c33:D, 8c34:A, 8c34:B, 8c34:C, 8c34:D, 8c35:A, 8c35:B, 8c35:C, 8c35:D, 8c36:A, 8c36:B, 8c36:C, 8c36:D, 8c37:A, 8c37:B, 8c37:C, 8c37:D, 8c73:A, 8c73:B, 8c73:C, 8c73:D, 8c76:A, 8c76:B, 8c76:C, 8c76:D, 5c8a:A, 5c8a:B, 5c8a:C, 5c8a:D, 5c8d:A, 5c8d:B, 5c8d:C, 5c8d:D, 5c8d:F, 5c8d:G, 5c8d:H, 5c8e:A, 5c8e:B, 5c8e:C, 5c8e:E, 5c8e:F, 5c8e:G, 5c8e:D, 5c8e:H, 5c8f:A, 3whp:A
2 7te2:A 205 71 0.1416 0.1512 0.4366 5.03e-10
3 8j2y:A 327 156 0.2237 0.1498 0.3141 5.68e-07 8j2y:B
4 8j2x:A 337 184 0.2694 0.1751 0.3207 2.98e-04 8j2w:A, 8j2w:B
5 4jgi:B 206 147 0.1644 0.1748 0.2449 0.008 4jgi:A
6 4z17:A 424 98 0.1507 0.0778 0.3367 0.057 4yws:A, 4z17:B, 4z1y:A, 4z1y:B
7 7xcn:P 215 104 0.1096 0.1116 0.2308 0.88 7xcn:M, 7xcn:N, 7xcn:O, 7xcn:Q, 7xcn:R
8 3c9h:B 339 64 0.0868 0.0560 0.2969 0.93 3c9h:A
9 2fge:A 979 77 0.1096 0.0245 0.3117 3.1 2fge:B
10 8swu:A 269 35 0.0731 0.0595 0.4571 3.4 8swu:B, 8swu:C
11 3sfv:A 179 18 0.0411 0.0503 0.5000 3.6 8alk:B, 7eq2:A, 7eq2:B, 4fmb:B, 4fmb:D, 4fmb:F, 4fmc:B, 4fmc:D, 4fmd:B, 4fmd:D, 4fmd:F, 4fme:B, 4fme:E, 2fol:A, 4hlq:B, 4hlq:D, 4hlq:F, 4hlq:H, 4hlq:J, 4i1o:A, 4i1o:C, 4i1o:E, 4i1o:G, 4iru:B, 4iru:D, 4iru:F, 4jvs:B, 3nkv:A, 3nkv:B, 5o74:B, 5o74:D, 5o74:F, 5o74:H, 5o74:J, 5o74:L, 6sku:B, 5szh:B, 5szk:B, 3tkl:A
12 5af7:B 391 137 0.1324 0.0742 0.2117 3.6 5af7:A, 5ahs:A, 5ahs:B, 5ahs:C, 5ahs:E, 5ahs:F, 5ahs:D
13 4fmc:F 73 16 0.0365 0.1096 0.5000 4.2
14 7acs:A 140 29 0.0594 0.0929 0.4483 6.1 7act:A, 8iv3:D, 8j6x:A, 8j6x:D, 6vyo:A, 6vyo:B, 6vyo:C, 6vyo:D, 6wkp:B, 6wkp:C, 6wkp:D, 7xwz:A, 7xwz:B, 7xx1:A, 7xx1:B, 7xx1:C, 7xx1:D
15 8ppg:B 243 41 0.0685 0.0617 0.3659 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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