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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLHGQDVITVSNG
GRIMRSWETNIGGLNWEITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYSYGS
GVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQS
LDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHYALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEAC
FNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGKVVLWSREES
LAEVVCLEMVDLPLTGAQAELEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLNIDTLARDEFNLQKMMVMVTASGKLF
GIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSSLYVFNPIFGKWSQVAPPVLKRPILQS
LLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQR
IVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTGRIIHSSVQKKAKGPVHIVH
SENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSSISAMEATITERGITSRHLLIGLP
SGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTR
VYPSKQFDVLKDDYDYVLISSVLFGLVFATMITKRLAQVKLLNRAWR

The query sequence (length=927) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ww7:A 927 927 1.0000 1.0000 1.0000 0.0
2 6l8a:C 429 105 0.0280 0.0606 0.2476 0.004
3 6l8a:C 429 247 0.0593 0.1282 0.2227 2.0
4 4imm:A 331 99 0.0324 0.0906 0.3030 0.52 4imm:B
5 6l8a:F 457 111 0.0259 0.0525 0.2162 0.77 6l8a:E
6 3lm8:A 214 81 0.0205 0.0888 0.2346 1.7 3lm8:B, 3lm8:C, 3lm8:D
7 4lt6:A 467 65 0.0227 0.0450 0.3231 2.3 4lt6:B
8 6dt7:A 265 39 0.0140 0.0491 0.3333 3.2 6dt8:A, 6dta:A
9 6mgj:A 747 124 0.0302 0.0375 0.2258 5.7 6mgj:B, 6mgj:C, 6mgj:D, 6mgj:E, 6mgj:F, 6mgj:G, 6mgj:H, 6mgk:A, 6mgk:B, 6mgk:C, 6mgk:D, 6mgl:A
10 3dg6:A 366 79 0.0248 0.0628 0.2911 6.4 3dg3:A, 3dg7:A, 3dg7:B, 3dg7:C, 3dg7:D
11 7ajt:UO 493 118 0.0324 0.0609 0.2542 8.8 7aju:UO, 7d4i:AF, 7d5s:AF, 7d63:AF, 6ke6:AF, 6lqp:AF, 6lqq:AF, 6lqr:AF, 6lqs:AF, 6lqt:AF, 6lqu:AF, 6lqv:AF, 6nd4:J, 7suk:LJ, 5wlc:LJ, 6zqa:UO, 6zqb:UO, 6zqc:UO, 6zqd:UO
12 5koh:B 510 62 0.0205 0.0373 0.3065 9.9 5koh:D, 5koj:B, 5koj:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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