Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
EDPRRDTSLMINERCNFPHNMLSEENINFIQDAVCNGDLGAVAALNSGLPMAPYMLEALLAVRVKHRLTKVRQTLEPVIC
YTISVAHLINGTRILRSATAKHATAWGPNDKHRAESGLRRIYRALNLEDNPFDLVEAVGDLDLSQGAYEGYVRHIYSLMK
SLGHDVGHLSRSLDYSTMTVFNYLYESPLFTSQEAVTMYSRNLAGITKMSREPFETLSVVHRSKEPPEILNDMLFLLSVG
RMIVLHQESLRALRKNLILTASALCSILYTAYTQVPETKSLFREVAHEAHALLSSRSPDTPNFRPFVACMLQFIKQIIAA
DVYTCPRYLTNQILAVTNNPYNDQNIFKCPRSLVHYVGDALFKKTMTQELLVSCTDQEATYQTYELPSVSELVGEGVAKR
AH

The query sequence (length=402) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8btj:A 403 403 0.9950 0.9926 0.9926 0.0 8btj:B
2 1e3e:A 376 135 0.0945 0.1011 0.2815 0.36 1e3e:B, 1e3i:A, 1e3i:B, 1e3l:A, 1e3l:B
3 6bxk:A 340 78 0.0547 0.0647 0.2821 2.0 6bxk:B, 6bxl:A, 6bxl:B, 3lzd:A, 3lzd:B
4 7dhw:A 726 105 0.0622 0.0344 0.2381 2.4
5 7mmz:A 559 41 0.0274 0.0197 0.2683 3.0
6 8qp8:A 1918 45 0.0398 0.0083 0.3556 3.6
7 7abg:A 2174 45 0.0398 0.0074 0.3556 3.7 7abi:A, 8q91:A, 8rc0:A
8 8i0p:A 2149 45 0.0398 0.0074 0.3556 3.8 8q7q:A, 8q7v:A, 8q7w:A
9 8c6j:A 2261 45 0.0398 0.0071 0.3556 3.8 6ah0:A, 6ahd:A, 8bc8:J, 6ff4:A, 6ff7:A, 9fmd:A, 8i0r:A, 8i0t:A, 8i0w:A, 6icz:A, 6id0:A, 6id1:A, 4jk9:A, 4jk9:B, 4jka:A, 4jka:B, 5mqf:A, 5o9z:A, 6qdv:A, 8qoz:A, 8qpa:A, 8qpb:A, 8qpk:A, 8r09:A, 8r0a:A, 8r0b:A, 8rm5:A, 8ro2:A, 7w59:A, 7w5a:A, 7w5b:A, 5xjc:A, 5yzg:A, 6zym:A
10 8q7x:A 1914 45 0.0398 0.0084 0.3556 3.8
11 8y6o:C 2227 45 0.0398 0.0072 0.3556 3.8 8h6e:5B, 8h6j:5B, 8qp9:A, 6qw6:5A, 6qx9:5A, 8qxd:A, 8r08:A
12 5z56:A 2232 45 0.0398 0.0072 0.3556 3.9 7aav:A, 7abf:A, 8ch6:a, 7dvq:A, 8i0s:A, 5z58:A
13 8h6k:5B 2253 45 0.0398 0.0071 0.3556 3.9 8h6l:5B, 8i0u:A, 8i0v:A, 8q7n:A, 8qo9:A, 8qpe:A, 7qtt:a, 8qzs:A
14 6fdf:A 325 87 0.0622 0.0769 0.2874 4.0 6fdf:B, 6fdf:C, 6fdf:D
15 5z57:A 1978 45 0.0398 0.0081 0.3556 4.0
16 2asb:A 226 71 0.0572 0.1018 0.3239 5.3 2atw:A, 2atw:C
17 3eo7:A 487 56 0.0473 0.0390 0.3393 8.1
18 3i5f:A 810 63 0.0498 0.0247 0.3175 8.5
19 8ro0:A 2231 45 0.0373 0.0067 0.3333 8.8 8ro1:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218