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BioLiP
>protein
EDPETCLQLNMVYQEVIQEKLAEANLLLAQNREQQEELMRDLAGTYMGHFMKPYFKDKVTGVGPPANEDTREKAAQGIKA
FEELLVTKWKNWEKALLRKSVVSDRLQRLLQPKLLKLEYLHQKQSKVSSELERQALEKQGREAEKEIQDINQLPEEALLG
NRLDSHDWEKISNINFEGSRSAEEIRKFWQNSEHPSINKQEWSREEEERLQAIAAAHGHLEWQKIAEELGTSRSAFQCLQ
KFQQHNKALKRKEWTEEEDRMLTQLVQEMRVGSHIPYRRIVYYMEGRDSMQLIYRWTKSLDPG

The query sequence (length=303) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7zwc:c 303 303 0.9967 0.9967 0.9967 0.0 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
2 8ity:4 365 250 0.8251 0.6849 1.0000 0.0 8iue:4, 8iuh:4
3 8ity:4 365 122 0.1155 0.0959 0.2869 0.010 8iue:4, 8iuh:4
4 7xur:A 307 255 0.6700 0.6612 0.7961 2.75e-137
5 1h88:C 152 137 0.1254 0.2500 0.2774 3.34e-10 1h89:C, 1h8a:C, 1mse:C, 1msf:C
6 1h88:C 152 107 0.1188 0.2368 0.3364 2.49e-08 1h89:C, 1h8a:C, 1mse:C, 1msf:C
7 5mqf:L 336 98 0.1155 0.1042 0.3571 4.06e-06
8 5mqf:L 336 104 0.0957 0.0863 0.2788 0.18
9 8ch6:P 330 99 0.1221 0.1121 0.3737 6.39e-06 8i0t:L, 7qtt:P
10 8ch6:P 330 104 0.0957 0.0879 0.2788 0.16 8i0t:L, 7qtt:P
11 3osg:A 110 100 0.1023 0.2818 0.3100 6.80e-06 3osf:A, 3osf:D, 3osg:D
12 3osg:A 110 60 0.0693 0.1909 0.3500 0.65 3osf:A, 3osf:D, 3osg:D
13 3osg:A 110 58 0.0627 0.1727 0.3276 3.0 3osf:A, 3osf:D, 3osg:D
14 3jb9:W 426 98 0.1122 0.0798 0.3469 2.43e-05
15 3jb9:W 426 102 0.0924 0.0657 0.2745 0.004
16 8i0s:L 169 76 0.0924 0.1657 0.3684 2.44e-05
17 8i0s:L 169 69 0.0726 0.1302 0.3188 0.063
18 5z56:L 342 76 0.0924 0.0819 0.3684 2.45e-05 5z57:L, 5z58:L
19 5z56:L 342 102 0.0957 0.0848 0.2843 0.057 5z57:L, 5z58:L
20 8i0w:L 419 76 0.0924 0.0668 0.3684 3.30e-05 5yzg:L
21 8i0w:L 419 102 0.0957 0.0692 0.2843 0.063 5yzg:L
22 8i0u:L 387 76 0.0924 0.0724 0.3684 3.35e-05 8i0v:L
23 8i0u:L 387 102 0.0957 0.0749 0.2843 0.13 8i0v:L
24 9fmd:L 555 76 0.0924 0.0505 0.3684 3.66e-05 8c6j:O, 7dvq:L, 6ff4:L, 8i0p:L, 8i0r:L, 6zym:L
25 9fmd:L 555 102 0.0957 0.0523 0.2843 0.084 8c6j:O, 7dvq:L, 6ff4:L, 8i0p:L, 8i0r:L, 6zym:L
26 6icz:L 454 76 0.0924 0.0617 0.3684 3.95e-05 5xjc:L
27 6icz:L 454 102 0.0957 0.0639 0.2843 0.083 5xjc:L
28 8ro2:L 555 76 0.0924 0.0505 0.3684 4.03e-05 7abi:L
29 8ro2:L 555 102 0.0957 0.0523 0.2843 0.070 7abi:L
30 6qdv:O 441 76 0.0924 0.0635 0.3684 4.08e-05 7w59:L, 7w5a:L, 7w5b:L
31 6qdv:O 441 102 0.0957 0.0658 0.2843 0.14 7w59:L, 7w5a:L, 7w5b:L
32 6id0:L 475 76 0.0924 0.0589 0.3684 4.18e-05 6id1:L
33 6id0:L 475 102 0.0957 0.0611 0.2843 0.081 6id1:L
34 8ro1:L 623 102 0.1089 0.0530 0.3235 2.12e-04 8ro0:L
35 8ro1:L 623 76 0.0825 0.0401 0.3289 7.16e-04 8ro0:L
36 2kdz:A 107 100 0.0858 0.2430 0.2600 4.57e-04
37 2kdz:A 107 68 0.0693 0.1963 0.3088 0.035
38 5eyb:A 340 125 0.1254 0.1118 0.3040 5.66e-04 5eyb:B
39 5eyb:A 340 120 0.1056 0.0941 0.2667 0.003 5eyb:B
40 6kks:A 106 65 0.0627 0.1792 0.2923 8.69e-04
41 7b9v:O 280 78 0.0660 0.0714 0.2564 0.29
42 7b9v:O 280 69 0.0660 0.0714 0.2899 7.1
43 6exn:O 320 78 0.0660 0.0625 0.2564 0.32 6bk8:S
44 6exn:O 320 69 0.0660 0.0625 0.2899 4.2 6bk8:S
45 5gmk:c 436 78 0.0660 0.0459 0.2564 0.37 5lj3:O, 5mps:O, 5mq0:O, 5wsg:c
46 5gmk:c 436 69 0.0660 0.0459 0.2899 7.6 5lj3:O, 5mps:O, 5mq0:O, 5wsg:c
47 5lj5:O 283 78 0.0660 0.0707 0.2564 0.42
48 5lj5:O 283 69 0.0660 0.0707 0.2899 7.1
49 5gm6:c 415 78 0.0660 0.0482 0.2564 0.45
50 5gm6:c 415 69 0.0660 0.0482 0.2899 7.0
51 6j6g:c 436 78 0.0660 0.0459 0.2564 0.48 6j6h:c, 6j6n:c, 6j6q:c, 5y88:J, 5ylz:J
52 6j6g:c 436 69 0.0660 0.0459 0.2899 4.1 6j6h:c, 6j6n:c, 6j6q:c, 5y88:J, 5ylz:J
53 7dco:L 435 78 0.0660 0.0460 0.2564 0.56
54 7dco:L 435 102 0.0858 0.0598 0.2549 3.4
55 5gmk:n 299 29 0.0396 0.0401 0.4138 0.87 6j6g:n, 6j6n:n, 6j6q:n, 5wsg:n
56 8c0v:B 1030 163 0.1254 0.0369 0.2331 0.89 8c0v:D, 8c0v:F, 8c0w:A, 8c0w:C, 8c0w:E, 8u0v:D, 8u0v:F, 8u0v:B
57 7d8c:A 1057 130 0.1056 0.0303 0.2462 1.2
58 3zqc:J 119 44 0.0462 0.1176 0.3182 1.4 3zqc:A, 3zqc:D, 3zqc:G
59 1xkv:B 519 183 0.1353 0.0790 0.2240 1.6 1j3b:A, 1j3b:B, 2pc9:A, 2pc9:B, 2pc9:C, 2pc9:D, 1xkv:A
60 6dch:A 296 65 0.0594 0.0608 0.2769 2.5 6l6w:A, 6l6x:A, 7scp:A, 6xn6:A, 6xo3:A, 6xoj:A, 6xpa:A
61 5ylz:T 344 29 0.0363 0.0320 0.3793 2.7
62 7b9v:o 330 29 0.0363 0.0333 0.3793 2.9 6bk8:M, 6exn:o, 5mps:o, 5mq0:o
63 7abg:A 2174 54 0.0627 0.0087 0.3519 2.9 7abi:A, 8q91:A, 8rc0:A
64 6w62:A 910 130 0.1023 0.0341 0.2385 5.6
65 5fjw:A 263 72 0.0660 0.0760 0.2778 5.7 5fjw:B, 5fjw:F, 5fjw:C, 5fjw:D, 5fjw:G, 5fjw:E, 5fjw:H, 5fjx:B, 5fjx:A, 5fjz:A, 5fjz:C, 5fjz:B, 5fjz:D, 5fk0:B
66 6w5c:A 1023 130 0.1023 0.0303 0.2385 6.9
67 6w64:A 928 130 0.1023 0.0334 0.2385 7.1
68 7eu9:A 1078 130 0.1089 0.0306 0.2538 9.3 7d2l:A, 7d3j:A
69 3o2e:A 86 62 0.0561 0.1977 0.2742 9.5
70 1g43:A 160 32 0.0297 0.0563 0.2812 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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