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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EDMQELYFPTPKLIEWENGVRQYSTVRGDTEVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDVTRKMTALESAYI
APPHVPHGARNDTDQEVIAIDIKRLKADETYTSPEDYFLDIFKTRDLLPGMEVTFFVEDWVEIMLAKIPGNGGEMPFHKH
RNEQIGICIGGGYDMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPPRYNRA

The query sequence (length=222) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3h9a:A 225 221 0.9955 0.9822 1.0000 4.73e-169 3h7j:A, 3h7j:B, 3h7y:A, 3h7y:B, 3h9a:B
2 5zbf:A 210 209 0.2748 0.2905 0.2919 2.46e-26 5zbe:A
3 5fq0:C 109 62 0.0901 0.1835 0.3226 0.014
4 5fq0:C 109 46 0.0811 0.1651 0.3913 0.15
5 3h50:A 114 100 0.1036 0.2018 0.2300 0.017
6 5fpx:B 107 60 0.0946 0.1963 0.3500 0.083 5fpx:A
7 3nl1:A 366 70 0.1036 0.0628 0.3286 0.12 4fag:A, 4fah:A, 4fbf:A, 3njz:A, 3nkt:A, 3nst:A, 3nvc:A, 3nw4:A, 2phd:A, 2phd:B, 2phd:C, 2phd:D
8 3ibm:B 146 43 0.0676 0.1027 0.3488 1.5 3ibm:A
9 8cp2:A 600 53 0.0631 0.0233 0.2642 1.6 8cp2:B, 8cp5:A, 8cp5:B
10 3pmq:A 593 83 0.1126 0.0422 0.3012 1.8
11 7z79:B 306 33 0.0586 0.0425 0.3939 2.5 7z79:A, 7z79:C, 7z79:D, 7z79:E, 7z79:F
12 3lag:A 96 74 0.0901 0.2083 0.2703 3.6
13 6bbt:B 267 27 0.0541 0.0449 0.4444 3.7
14 7zvy:A 112 60 0.0676 0.1339 0.2500 3.7
15 7ev8:A 328 47 0.0586 0.0396 0.2766 5.9
16 1ltk:C 424 56 0.0721 0.0377 0.2857 7.2 1ltk:A, 1ltk:B
17 6c66:C 367 88 0.1081 0.0654 0.2727 9.1 6c66:D, 6c66:E, 6c66:F, 5u07:E, 5u07:F, 5u07:G, 5u07:H, 5u0a:E, 5u0a:F, 5u0a:G, 5u0a:H
18 6c66:B 334 88 0.1081 0.0719 0.2727 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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