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BioLiP
>protein
EDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTRWFHNESLISSQTSSYFIAAARVNNSGEYRCQTSLSTLSDPV
QLEVHIGWLLLQAPRWVFKEEESIHLRCHSWKNTLLHKVTYLQNGKGRKYFHQNSDFYIPKATLKDSGSYFCRGLVGSKN
VSSETVQIT

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7kcz:F 169 169 1.0000 1.0000 1.0000 3.62e-127
2 8cha:A 168 166 0.4970 0.5000 0.5060 1.92e-50
3 1rpq:D 167 165 0.4142 0.4192 0.4242 2.90e-39 1rpq:A, 1rpq:B, 1rpq:C
4 8edi:A 200 88 0.1420 0.1200 0.2727 0.001 8edi:B
5 5vkm:A 306 71 0.1361 0.0752 0.3239 0.16
6 4liq:E 469 178 0.2604 0.0938 0.2472 0.17
7 5mol:B 322 42 0.0947 0.0497 0.3810 0.41 6eyo:A, 4ezm:C, 4gko:C, 4j4p:A, 5moi:B, 5moi:D, 5mok:D, 5mol:A, 7mxi:B, 5nqw:A, 1o0v:A, 1o0v:B, 7shy:A, 7shy:B, 7shz:B, 7si0:B, 7si0:H
8 7dzn:E 202 72 0.1183 0.0990 0.2778 0.95 3dxa:D, 3dxa:I, 3dxa:N, 7dzm:E, 2esv:D, 7ndt:DDD, 7ndt:III, 4ozh:E, 4ozh:G, 6rsy:D, 8trl:I, 8trl:G, 8vcy:D, 8vd2:D, 5wki:D
9 7za1:E 251 92 0.1361 0.0916 0.2500 1.3 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
10 5xnp:A 361 66 0.1243 0.0582 0.3182 1.5 5xnp:B, 5xnq:A
11 1dbb:H 219 66 0.1361 0.1050 0.3485 1.6 1dbj:H, 1dbk:H, 1dbm:H, 2dbl:H, 1tet:H
12 4p2o:C 200 36 0.0828 0.0700 0.3889 1.6 4p2q:D, 4p2q:I, 4p2q:N, 4p2q:S, 4p2r:D, 4p2r:I, 4p2r:N, 4p2r:S, 3qib:C, 3qiu:C, 3qiw:C
13 1n26:A 299 60 0.1124 0.0635 0.3167 2.0 8iow:I
14 6eg0:B 309 107 0.1598 0.0874 0.2523 3.0 6nrw:B
15 6mss:A 181 36 0.0769 0.0718 0.3611 3.5
16 6rsy:I 191 63 0.1006 0.0890 0.2698 3.9
17 3mbe:C 192 38 0.0828 0.0729 0.3684 4.1 3mbe:G
18 3j7a:Y 154 47 0.0947 0.1039 0.3404 6.2 3jbn:Y, 3jbo:Y, 3jbp:Y, 6okk:Y, 8tpu:SY
19 1cdg:A 686 50 0.0828 0.0204 0.2800 8.2 1cgv:A, 1cgw:A, 1cgx:A, 1cgy:A, 1cxe:A, 1cxf:A, 1cxh:A, 1cxi:A, 1cxk:A, 1cxl:A, 2cxg:A, 1d3c:A, 2dij:A, 1dtu:A, 1eo5:A, 1eo7:A, 1kck:A, 1kcl:A, 1ot1:A, 1ot2:A, 1pez:A, 1pj9:A, 1tcm:A, 1tcm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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