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BioLiP
>protein
EDLLKAVRLIKFLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILSTYLGR

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6cf2:F 57 57 1.0000 1.0000 1.0000 5.36e-36 4pmi:B, 4pmi:C
2 3apt:A 292 23 0.2105 0.0411 0.5217 2.6 3apy:A, 3apy:B, 3apy:C, 3apy:D, 3apy:E, 3apy:F, 3apy:G, 3apy:H, 8eac:A, 7th4:A, 7th4:B, 7th5:A, 7th5:B, 1v93:A
3 1kny:A 253 17 0.1579 0.0356 0.5294 5.0 1kny:B, 6nmk:A, 6nmk:B, 6nml:A, 6nml:B, 6nmm:A, 6nmm:B, 6nmm:C, 6nmm:D, 6nmn:A, 6nmn:B, 6p01:B, 6p04:A, 6p04:B, 6p06:A, 6p06:B, 6p08:A, 6p08:D, 6un8:A, 6un8:B
4 4g56:A 617 21 0.1404 0.0130 0.3810 6.6 4g56:C
5 6pbd:B 331 27 0.1754 0.0302 0.3704 9.6
6 6pbd:A 350 27 0.1754 0.0286 0.3704 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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