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BioLiP
>protein
EDKLALGREIFLERSEPQCALCHTLADAEAVGEVGPNLDELKPDAERVNTAVTNGIGPMPANEILTDEEIEAVALYVSTV
AGK

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pwa:D 87 83 1.0000 0.9540 1.0000 4.37e-56 4pw9:B, 4pwa:A, 4pwa:B, 4pwa:C
2 3ph2:B 85 85 0.3735 0.3647 0.3647 0.001 2v08:A, 2v08:B
3 1h31:B 138 53 0.2530 0.1522 0.3962 0.002 1h31:D, 1h31:F, 1h31:H, 1h32:B, 1h33:B, 2oz1:B, 2oz1:D, 2oz1:F, 2oz1:H
4 1cyj:A 90 83 0.3494 0.3222 0.3494 0.008 1cyi:A
5 3dr0:A 93 34 0.1928 0.1720 0.4706 0.53 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
6 1gks:A 78 82 0.2651 0.2821 0.2683 0.82
7 8hn3:A 80 83 0.2651 0.2750 0.2651 1.3 8hn3:B
8 1c6s:A 87 87 0.3373 0.3218 0.3218 1.9 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
9 7c5o:O 338 43 0.1807 0.0444 0.3488 2.0 7c5f:O, 7c5f:P, 7c5f:Q, 7c5f:R, 7c5g:O, 7c5g:P, 7c5g:Q, 7c5g:R, 7c5h:O, 7c5h:P, 7c5h:Q, 7c5h:R, 7c5i:O, 7c5i:P, 7c5i:Q, 7c5i:R, 7c5j:O, 7c5j:P, 7c5j:Q, 7c5j:R, 7c5k:O, 7c5k:P, 7c5k:Q, 7c5k:R, 7c5l:O, 7c5l:P, 7c5l:Q, 7c5l:R, 7c5m:O, 7c5m:P, 7c5m:Q, 7c5m:R, 7c5n:O, 7c5n:P, 7c5n:Q, 7c5n:R, 7c5o:P, 7c5o:Q, 7c5o:R, 7c5p:O, 7c5p:P, 7c5p:Q, 7c5p:R, 7c5q:O, 7c5q:P, 7c5q:Q, 7c5q:R, 7c5r:O, 7c5r:P, 7c5r:Q, 7c5r:R, 7c7k:O, 7c7k:P, 7c7k:Q, 7c7k:R
10 1amy:A 403 51 0.1928 0.0397 0.3137 2.1 1ava:A, 1ava:B, 1bg9:A
11 4e3q:A 452 42 0.2169 0.0398 0.4286 2.5 4e3q:B, 4e3q:C, 4e3q:D, 4grx:C
12 7ooc:A 249 33 0.1687 0.0562 0.4242 3.7 7p6z:A, 7pah:A, 7pai:A, 7paj:A, 7pak:A, 7pal:A, 7pam:A, 7pan:A, 7pao:A, 7paq:A, 7par:A, 7pas:A, 7ph9:A, 7pha:A, 7phb:A, 7phc:A, 7pi8:A, 7pi9:A, 7pia:A, 7pib:A, 7pic:A, 7pio:A, 7pip:A, 7piq:A, 7pir:A, 7pis:A, 7pit:A
13 7aih:Ay 142 75 0.2530 0.1479 0.2800 4.3 7ane:Ay
14 3ehu:A 441 51 0.2048 0.0385 0.3333 5.1 3ehu:B
15 3ve7:A 206 32 0.1566 0.0631 0.4062 8.2 3ve7:B
16 8jej:A 540 40 0.1687 0.0259 0.3500 8.6 8jek:A, 8k6j:A, 8k6k:A, 7w2j:A, 7w2j:D, 7wsq:A, 7wsq:D, 8xcm:A, 8xcn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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