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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQ
FENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQK
DTFHSFFQHFSYNHMMEKIKSYVNYVLSEKSSTFLMKAAAKVVESK

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8w8g:C 208 206 1.0000 0.9904 1.0000 1.29e-155 3bqo:A, 8w8g:A, 8w8g:B, 8w8g:D, 5wir:B, 5wir:A, 5xup:A, 5xup:B
2 3bu8:B 207 203 0.2718 0.2705 0.2759 2.17e-21 3bu8:A, 3bua:A, 3bua:D, 3bua:B, 3bua:C, 7c5d:A, 7c5d:B, 6j67:A, 4m7c:A, 4m7c:B, 4rqi:A, 4rqi:B, 4rqi:C, 4rqi:D, 5wqd:A, 5wqd:B, 5wqd:C, 5wqd:D, 5wqd:E, 5wqd:F, 5wqd:G
3 2b33:B 126 72 0.0825 0.1349 0.2361 1.6
4 6rxy:Cz 275 28 0.0485 0.0364 0.3571 4.7 6rxz:Cz
5 8ckb:THA016 188 38 0.0534 0.0585 0.2895 5.8 8ckb:O011, 8ckb:O002, 8ckb:O013, 8ckb:O004, 8ckb:O019, 8ckb:O003, 8ckb:O006, 8ckb:O008, 8ckb:O015, 8ckb:O001, 8ckb:O010, 8ckb:O009, 8ckb:O012, 8ckb:O005, 8ckb:O014, 8ckb:O018, 8ckb:O023, 8ckb:O017, 8ckb:O020, 8ckb:O007, 8ckb:O022, 8ckb:O021, 8ckb:O024, 7qoj:H, 7qol:H, 7qol:G, 7qol:Z
6 8acb:A 220 66 0.0922 0.0864 0.2879 6.6
7 5odv:A 207 75 0.0874 0.0870 0.2400 8.2 5odv:B, 5odv:C, 5odv:D, 5odv:E, 5odv:F, 5odv:G, 5odv:H, 5odv:I, 5odv:J, 5odv:K, 5odv:L, 5odv:M, 5odv:N, 5odv:O, 5odv:P, 5odv:Q, 5odv:R, 5odv:S, 5odv:T, 5odv:U, 5odv:V, 5odv:W, 5odv:X
8 6t34:A 207 66 0.0874 0.0870 0.2727 9.0 6t34:B, 6t34:C, 6t34:D, 6t34:E, 6t34:F, 6t34:G, 6t34:H, 6t34:I, 6t34:J, 6t34:K, 6t34:L, 6t34:M, 6t34:N, 6t34:O, 6t34:P, 6t34:Q, 6t34:R, 6t34:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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