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BioLiP
>protein
EDAGLVAEAEAVAAGWMLDFLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQ
FENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFFKSKLLMIISQKDTFHSFFQ
HFSYNHMMEKIKSYVNYVLSEKSSTFLMKAAAKVVE

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8w8g:C 208 204 1.0000 0.9423 0.9608 3.45e-143 3bqo:A, 8w8g:A, 8w8g:B, 8w8g:D, 5wir:B, 5wir:A, 5xup:A, 5xup:B
2 3bu8:B 207 201 0.2806 0.2657 0.2736 9.58e-19 3bu8:A, 3bua:A, 3bua:D, 3bua:B, 3bua:C, 7c5d:A, 7c5d:B, 6j67:A, 4m7c:A, 4m7c:B, 4rqi:A, 4rqi:B, 4rqi:C, 4rqi:D, 5wqd:A, 5wqd:B, 5wqd:C, 5wqd:D, 5wqd:E, 5wqd:F, 5wqd:G
3 8ckb:THA016 188 33 0.0510 0.0532 0.3030 2.8 8ckb:O011, 8ckb:O002, 8ckb:O013, 8ckb:O004, 8ckb:O019, 8ckb:O003, 8ckb:O006, 8ckb:O008, 8ckb:O015, 8ckb:O001, 8ckb:O010, 8ckb:O009, 8ckb:O012, 8ckb:O005, 8ckb:O014, 8ckb:O018, 8ckb:O023, 8ckb:O017, 8ckb:O020, 8ckb:O007, 8ckb:O022, 8ckb:O021, 8ckb:O024, 7qoj:H, 7qol:H, 7qol:G, 7qol:Z
4 8que:C 697 97 0.1071 0.0301 0.2165 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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