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BioLiP
>protein
ECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAGSKVWGPFCGEK
SPEPISTQSHSIQILFRSDNSGENRGWRLSYRA

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3pof:B 114 113 1.0000 0.9912 1.0000 1.31e-82 3pob:A, 3poe:A, 3pof:A, 3pog:A, 3pog:B, 3pog:C, 3poi:A, 3poi:B, 3poj:A, 3poj:B
2 4aqb:A 345 113 0.8850 0.2899 0.8850 3.08e-70 5ckq:A, 3dem:A, 3dem:B
3 4aqb:A 345 112 0.3540 0.1159 0.3571 2.81e-11 5ckq:A, 3dem:A, 3dem:B
4 5ckn:A 278 112 0.4956 0.2014 0.5000 1.57e-37 5cis:A, 5ckm:A, 5ckn:D, 1nt0:A, 1nt0:G
5 5ckn:A 278 101 0.2566 0.1043 0.2871 8.60e-07 5cis:A, 5ckm:A, 5ckn:D, 1nt0:A, 1nt0:G
6 6f1c:A 291 111 0.4336 0.1684 0.4414 7.03e-31 6f1c:C, 6f1d:A, 6f1h:A, 6f1h:C, 6f39:A, 6f39:B
7 6f1c:A 291 110 0.3451 0.1340 0.3545 2.45e-12 6f1c:C, 6f1d:A, 6f1h:A, 6f1h:C, 6f39:A, 6f39:B
8 4los:A 187 116 0.4425 0.2674 0.4310 3.47e-27
9 6f1c:D 276 116 0.4425 0.1812 0.4310 3.26e-26 6f1c:B, 6f1h:D, 6f1h:B, 4lmf:A, 4lmf:B, 4lmf:C, 4lmf:D, 4lor:A, 1nzi:A, 1nzi:B
10 6f1c:D 276 112 0.3363 0.1377 0.3393 5.63e-10 6f1c:B, 6f1h:D, 6f1h:B, 4lmf:A, 4lmf:B, 4lmf:C, 4lmf:D, 4lor:A, 1nzi:A, 1nzi:B
11 3kq4:B 457 115 0.3717 0.0919 0.3652 1.27e-15 3kq4:D, 3kq4:F
12 3kq4:B 457 107 0.3097 0.0766 0.3271 8.87e-13 3kq4:D, 3kq4:F
13 3kq4:B 457 112 0.2920 0.0722 0.2946 3.20e-12 3kq4:D, 3kq4:F
14 3kq4:B 457 106 0.2920 0.0722 0.3113 0.012 3kq4:D, 3kq4:F
15 6fzw:D 180 114 0.3451 0.2167 0.3421 8.45e-15
16 9en2:A 241 114 0.3451 0.1618 0.3421 1.51e-14 6fzv:D
17 9en2:A 241 117 0.3451 0.1618 0.3333 1.94e-10 6fzv:D
18 7m0r:E 458 115 0.3186 0.0786 0.3130 2.92e-14 7m0r:F
19 7m0r:E 458 119 0.3717 0.0917 0.3529 5.30e-13 7m0r:F
20 4gz9:A 562 116 0.3186 0.0641 0.3103 3.08e-14 9eou:A, 4gza:H, 2orz:A, 2qqm:A
21 4gz9:A 562 119 0.3717 0.0747 0.3529 7.44e-13 9eou:A, 4gza:H, 2orz:A, 2qqm:A
22 6gh8:A 120 115 0.3363 0.3167 0.3304 1.25e-13 6gh8:C
23 6v55:A 746 108 0.3186 0.0483 0.3333 1.89e-13
24 2qqo:A 431 115 0.3363 0.0882 0.3304 6.38e-12 5dn2:C, 5dn2:D, 5dn2:A, 5dq0:A, 7m22:N, 2qqo:B, 6tdb:A, 6tdb:B, 6tdb:C, 6tdb:D, 6tjt:A, 6tjt:B
25 7t4s:F 363 114 0.3363 0.1047 0.3333 6.39e-12
26 2wno:A 119 117 0.3363 0.3193 0.3248 5.54e-11
27 1szb:A 167 101 0.2743 0.1856 0.3069 3.08e-08 1szb:B
28 5fwt:A 293 115 0.2743 0.1058 0.2696 0.002 5fws:A, 5fww:B
29 2qs8:A 406 68 0.1681 0.0468 0.2794 0.14 2qs8:B
30 6zhe:F 3731 45 0.1593 0.0048 0.4000 0.58
31 7nfc:A 3562 36 0.1504 0.0048 0.4722 1.3 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
32 8eza:L 3720 36 0.1504 0.0046 0.4722 1.3 8eza:C, 7lt3:C, 7lt3:L
33 2gtl:D 140 45 0.1150 0.0929 0.2889 1.3 2gtl:H, 2gtl:L, 5m3l:D, 5m3l:H, 5m3l:L, 1x9f:D, 1x9f:H, 1x9f:L
34 7su3:A 3802 36 0.1504 0.0045 0.4722 1.4
35 8ezb:C 3724 36 0.1504 0.0046 0.4722 1.4 8ezb:L
36 7sud:A 3740 36 0.1504 0.0045 0.4722 1.5
37 7sgl:A 3852 36 0.1504 0.0044 0.4722 1.6
38 6rxt:UA 839 31 0.0796 0.0107 0.2903 2.1 5oql:A, 6rxu:UA, 6rxv:UA, 6rxx:UA, 6rxy:UA, 6rxz:UA
39 6xds:A 485 27 0.1062 0.0247 0.4444 2.1 6b8o:B, 6b8o:E, 6b8o:C, 6b8o:F, 6b8o:A, 6b8o:D
40 8ez9:L 3662 28 0.1327 0.0041 0.5357 2.4 8ez9:C
41 7k17:B 3645 27 0.1327 0.0041 0.5556 2.8 7k17:A
42 8bot:A 3528 27 0.1327 0.0043 0.5556 2.8
43 7nfe:A 3585 27 0.1327 0.0042 0.5556 2.9
44 6zha:A 3707 27 0.1327 0.0040 0.5556 3.0 6zh8:A
45 6zhe:A 3768 27 0.1327 0.0040 0.5556 3.1
46 2ww8:A 815 72 0.1681 0.0233 0.2639 5.0
47 8rd8:D 105 26 0.0973 0.1048 0.4231 6.6
48 7lsd:B 152 30 0.0973 0.0724 0.3667 7.0 7lsd:A, 7lsd:C, 7lsd:D
49 4icq:A 413 75 0.1947 0.0533 0.2933 7.4 4icq:B, 4icr:A, 4icr:B, 4ics:A, 4ics:B
50 9brd:a 770 21 0.0885 0.0130 0.4762 9.2 9b8o:a, 6wlw:R, 6wm2:R
51 7khr:a 750 21 0.0885 0.0133 0.4762 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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