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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ECRVLSIQSHVVRGYVGNRAAMFPLQVLGFEVDAVNSVQFSNHTGYAHWKGQVLKSQELHELYEGLKVNDVNKYDYVLTG
YTRDKSFLAMVVDIVRELKQQNSRLVYVCDPVMGDKWNGEGSMYVPQDLLPVYRDKVVPVADIITPNQFEAELLSGRKIH
SQEEAFEVMDMLHCMGPDTVVITSSDLPSSQGSDYLIALGSQRMRKPDGSTVTQRIRMEMRKVEAVFVGTGDLFAAMLLA
WTHKHPDNLKVACEKTVSAMQHVLQRTIRCAKAEAGEGQKPSPAQLELRMVQSKRDIEDPEIVVQATVL

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yk0:A 309 309 1.0000 1.0000 1.0000 0.0 6yk0:B, 6yk0:C, 6yk0:D, 6yk1:A, 6yk1:B, 6yk1:C, 6yk1:D
2 1rfu:A 312 309 0.8803 0.8718 0.8803 0.0 1lhr:A, 1lhr:B, 1rft:A, 1rfu:B, 1rfu:C, 1rfu:D, 1rfu:E, 1rfu:F, 1rfu:G, 1rfu:H, 1rfv:A, 1rfv:B, 1ygj:A, 1ygk:A, 1yhj:A
3 4en4:A 310 309 0.8641 0.8613 0.8641 0.0 2ajp:A, 2ajp:B, 4en4:B, 4eoh:A, 4eoh:B, 3fhx:A, 3fhx:B, 3fhy:A, 3fhy:B, 3keu:A, 3keu:B, 8wr2:A, 8wr2:B, 2yxt:A, 2yxt:B, 2yxu:A, 2yxu:B
4 6k8z:B 298 315 0.3851 0.3993 0.3778 1.17e-55 6k8z:A, 6k90:A, 6k90:B, 6k91:A, 6k91:B, 6k92:A, 6k92:B
5 3zs7:A 277 309 0.3528 0.3935 0.3528 7.10e-53
6 5b6a:A 288 309 0.3139 0.3368 0.3139 1.16e-39
7 1td2:A 287 180 0.2168 0.2334 0.3722 3.61e-31 1td2:B
8 6su9:A 295 317 0.2913 0.3051 0.2839 3.84e-31 6su9:B
9 4s1h:A 287 271 0.2395 0.2578 0.2731 2.57e-30 4s1h:B, 4s1i:A, 4s1i:B
10 5zwb:A 271 238 0.2136 0.2435 0.2773 1.65e-19 5zw9:A, 5zwa:A, 5zwa:B
11 2ddo:A 263 241 0.2136 0.2510 0.2739 9.97e-18 2ddw:A, 2ddw:B
12 3mbh:A 290 245 0.2104 0.2241 0.2653 3.85e-10 3mbh:B, 3mbh:C, 3mbh:D, 3mbh:E, 3mbh:F, 3mbj:A
13 7r8y:A 228 200 0.1845 0.2500 0.2850 1.07e-06
14 4xck:A 306 49 0.0647 0.0654 0.4082 5.66e-06 4xck:B, 4xck:C, 4xck:D, 4xda:A, 4xda:B, 4xda:C, 4xda:D
15 2i5b:A 269 110 0.1068 0.1227 0.3000 2.71e-05 2i5b:C, 2i5b:D, 2i5b:B, 2i5b:E
16 1gqt:B 307 49 0.0680 0.0684 0.4286 4.57e-05 1gqt:A, 1gqt:C, 1gqt:D, 1rk2:A, 1rk2:B, 1rk2:C, 1rk2:D, 1rkd:A, 1rks:A
17 3hyo:A 273 154 0.1456 0.1648 0.2922 1.83e-04 3ibq:A
18 7l07:A 214 190 0.1553 0.2243 0.2526 5.57e-04
19 6a8a:A 327 46 0.0550 0.0520 0.3696 0.019 6a8a:B, 6a8b:A, 6a8b:B, 6a8c:A, 6a8c:B, 5zwy:A, 5zwy:B
20 4c5k:D 276 87 0.0874 0.0978 0.3103 0.065 4c5k:A, 4c5k:B, 4c5k:C, 4c5l:A, 4c5l:B, 4c5l:C, 4c5l:D, 4c5m:A, 4c5m:B, 4c5m:C, 4c5m:D, 4c5n:A, 4c5n:B, 4c5n:C, 4c5n:D
21 5c41:A 317 133 0.1036 0.1009 0.2406 0.28 5byf:A, 5byf:B, 5c3y:A, 5c3y:B, 5c3y:C, 5c3y:D, 5c3y:E, 5c3y:F, 5c3y:G, 5c3y:H, 5c3y:I, 5c3y:J, 5c3y:K, 5c3y:L, 5c3z:A, 5c3z:B, 5c40:A, 5c40:B, 5c41:B, 5c41:C, 5c41:D, 2fv7:A, 2fv7:B, 6wjz:A, 6wjz:B, 6wk0:A, 6wk0:B, 6wk0:C, 6wk0:D
22 7w93:A 307 125 0.0939 0.0945 0.2320 0.45 7vsk:A, 7vte:A, 7vte:B, 7vte:C, 7vte:D, 7vtf:A, 7vtf:B, 7vtf:C, 7vtf:D, 7vtg:A, 7vtg:B, 7vtg:C, 7vtg:D, 7vva:A, 7vva:B, 7vva:C, 7vva:D
23 6yjs:BBB 486 82 0.0906 0.0576 0.3415 0.78 6yjs:AAA
24 4ywr:A 228 50 0.0583 0.0789 0.3600 1.0
25 6yjt:AAA 513 85 0.0906 0.0546 0.3294 2.0 8ce3:A, 6yjt:BBB, 6yju:AAA, 6yju:BBB, 6yjv:AAA, 6yjv:BBB, 5zic:B
26 2o2z:A 310 86 0.0906 0.0903 0.3256 3.0 2o2z:B, 2o2z:C, 2o2z:D
27 6zm0:AAA 155 102 0.0841 0.1677 0.2549 3.1
28 7sva:A 792 120 0.0841 0.0328 0.2167 3.5 7swf:A, 7swq:A
29 6z3c:AAA 379 79 0.0841 0.0686 0.3291 3.9 6z3b:A, 6z3b:B, 6z3c:BBB
30 1u5k:A 242 53 0.0518 0.0661 0.3019 4.9 4jcv:E, 4jcv:F, 1u5k:B, 2v1c:C, 1w3s:A, 1w3s:B
31 1dxe:A 253 45 0.0518 0.0632 0.3556 7.3 1dxe:B, 1dxf:A, 1dxf:B
32 2v5k:A 260 40 0.0421 0.0500 0.3250 7.3 4b5s:A, 4b5s:B, 4b5t:A, 4b5t:B, 4b5u:A, 4b5u:B, 4b5v:A, 4b5v:B, 4b5w:A, 4b5w:B, 4b5w:C, 4b5w:D, 4b5w:E, 4b5w:F, 2v5k:B
33 2ags:A 634 61 0.0583 0.0284 0.2951 7.8 2a75:A, 2fhr:A, 1mz6:A, 1n1t:A, 1n1v:A, 1n1y:A
34 1jxi:A 254 179 0.1327 0.1614 0.2291 9.6 1jxi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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