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BioLiP
>protein
ECACYTTRRAARQLGQAYDRALRPSGLTNTQFSTLAVISLSEGSDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAG
CKRIELTAKGRAALQKAVPLWRGVQAEVTAWPRVRRDIANLGQAAEAC

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fx4:B 133 136 0.9609 0.9248 0.9044 1.01e-78 4fx4:A
2 5hli:A 146 73 0.1406 0.1233 0.2466 8.50e-04 5hlg:A, 5hlg:B, 5hlg:C, 5hlg:D, 5hlg:E, 5hlg:F, 5hlg:G, 5hlg:H, 5hlh:A, 5hlh:B, 5hlh:C, 5hlh:D, 5hlh:E, 5hlh:F, 5hlh:G, 5hlh:H, 5hli:B
3 6c2s:A 142 105 0.2500 0.2254 0.3048 0.001 6c28:A, 6c28:D, 6c28:B, 6c28:C, 6c2s:D, 6c2s:B, 6c2s:C
4 3q5f:A 141 97 0.2188 0.1986 0.2887 0.002 3q5f:B
5 1fx7:A 230 42 0.1484 0.0826 0.4524 0.014 1b1b:A, 1fx7:B, 1fx7:C, 1fx7:D, 2isz:A, 2isz:B, 2isz:C, 2isz:D, 2it0:A, 2it0:B, 2it0:C, 2it0:D, 1u8r:A, 1u8r:B, 1u8r:C, 1u8r:D, 1u8r:G, 1u8r:H, 1u8r:I, 1u8r:J
6 4aij:B 142 86 0.2031 0.1831 0.3023 0.020 4aij:A, 4aik:A
7 2fbh:A 137 78 0.2266 0.2117 0.3718 0.080
8 4l5j:A 308 56 0.1406 0.0584 0.3214 0.38 4l4z:A, 4l4z:B, 4l50:A, 4l50:B, 4l51:A, 4l51:B, 4l5j:B, 4l5j:C, 4l5j:D
9 4a0l:E 709 48 0.1172 0.0212 0.3125 0.51 4a0l:H, 8ei1:A, 8ei1:B, 8ei1:C, 8ei1:D
10 1z9c:C 138 66 0.1406 0.1304 0.2727 0.73 1z9c:A, 1z9c:B, 1z9c:D, 1z9c:E, 1z9c:F
11 3gfi:A 143 68 0.1484 0.1329 0.2794 1.7 3gez:A, 3gfj:A, 3gfl:A, 3gfm:A, 2yr2:B
12 4a0k:A 719 59 0.1328 0.0236 0.2881 1.7 7opc:e, 7opd:e
13 5x80:A 137 95 0.2422 0.2263 0.3263 2.1 5hso:A, 5hso:C, 5hso:D, 5hso:B, 5x7z:A, 5x80:B
14 4p9u:E 272 31 0.1094 0.0515 0.4516 2.3 4p9u:F, 4p9u:A, 4p9u:B, 4pdk:A, 4pdk:B
15 8qpl:A 331 100 0.2109 0.0816 0.2700 2.3 8qpl:B
16 7d98:Q 288 45 0.1250 0.0556 0.3556 2.4 7d98:A, 7d98:B, 7d98:P, 5xxp:A, 5xxp:B
17 5dv5:A 267 31 0.1094 0.0524 0.4516 2.5 5dv5:B
18 1h9t:A 232 31 0.1094 0.0603 0.4516 2.7 1h9g:A, 1h9t:B, 1hw2:A, 1hw2:B
19 4czc:A 305 32 0.0938 0.0393 0.3750 3.9
20 4ev0:D 214 36 0.1016 0.0607 0.3611 7.5 4ev0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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