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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLT
YTGAIKLDDKDPNFKDQVILLNKHIDAYKTFP

The query sequence (length=112) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7o36:C 113 112 1.0000 0.9912 1.0000 4.63e-82 7n0i:D, 7o35:C, 7o35:D, 7o36:A, 7o36:B, 7o36:D, 7uxz:AAA, 7xxk:A, 7xxk:B, 7xxk:C, 7xxk:E
2 6g13:B 113 113 0.5357 0.5310 0.5310 5.46e-35 6g13:A
3 7b93:R 96 23 0.0982 0.1146 0.4783 3.1 7ak5:R, 7ak6:R, 8c2s:R, 8ca3:R, 6g2j:R, 6g72:R, 8iao:R, 8iap:R, 8ib4:R, 8ib5:R, 8ib9:R, 8iba:R, 8ibd:R, 8ibe:R, 8ic2:R, 8ic3:R, 8olt:R, 8om1:R, 7psa:R, 8pw5:7, 8pw6:7, 8pw7:7, 8rgp:7, 8rgq:7, 8rgr:7, 8rgt:7, 6zr2:R, 6ztq:R
4 5xf9:D 455 75 0.1875 0.0462 0.2800 6.6 5xf9:H, 5xfa:D, 5xfa:H
5 2h0u:A 196 45 0.1339 0.0765 0.3333 6.9
6 7kd7:A 204 80 0.1786 0.0980 0.2500 8.3 7kd7:D, 7kpu:D, 7kpu:A, 4u9v:B, 4u9w:B, 4u9w:A, 4u9w:C, 4u9w:D
7 2fna:A 352 17 0.0893 0.0284 0.5882 9.0 2fna:B
8 6s73:A 269 53 0.1250 0.0520 0.2642 9.6 5de2:A, 5de2:B, 6s73:B, 6s73:C, 6s75:A, 6s75:B, 6s75:C, 2wqn:A
9 5g0i:A 722 63 0.1518 0.0235 0.2698 9.7 5g0i:B
10 5g0j:A 756 63 0.1518 0.0225 0.2698 9.9 8a8z:A, 8a8z:B, 8bjk:A, 9cbk:A, 9cbk:B, 6cgp:A, 8cj7:A, 8cj7:B, 6csp:A, 6csp:B, 6csq:A, 6csq:B, 6csr:A, 6csr:B, 6css:A, 6css:B, 6cw8:A, 6cw8:B, 8d98:A, 8d98:B, 8d99:A, 8d99:B, 8d9a:A, 8d9a:B, 8d9b:A, 8d9b:B, 8d9c:A, 8d9c:B, 6dvl:A, 6dvl:B, 6dvm:A, 6dvm:B, 6dvm:C, 6dvm:D, 6dvn:A, 6dvn:B, 6dvn:C, 6dvn:D, 6dvo:A, 5eef:A, 5eef:B, 5eei:A, 5eei:B, 5eek:A, 5eem:B, 5eem:A, 5een:B, 5een:A, 5ef7:A, 5ef7:B, 5ef8:A, 5ef8:B, 5efb:D, 5efg:D, 5efg:A, 5efh:D, 5efh:A, 5efj:D, 5efk:B, 5efn:B, 5efn:A, 8eqi:A, 8eqi:B, 5g0g:A, 5g0h:A, 8g1z:A, 8g20:A, 8g20:B, 8gd4:A, 8gd4:B, 7jom:A, 7jom:B, 6mr5:A, 6mr5:B, 7o2p:A, 7o2p:B, 7o2r:A, 6pye:A, 6pye:B, 6pzo:A, 6pzo:B, 6pzr:A, 6pzr:B, 6pzs:A, 6pzu:A, 6pzu:B, 6q0z:A, 6q0z:B, 8qa7:A, 8qa7:B, 8qh9:A, 7qno:A, 6r0k:A, 6tcy:AAA, 6tcy:BBB, 6thv:A, 8tq0:A, 8tq0:B, 7u8z:A, 7u8z:B, 7u8z:C, 7u8z:D, 7uk2:A, 6uo2:A, 6uo2:B, 6uo3:A, 6uo4:A, 6uo4:B, 6uo5:A, 6uo7:A, 6uob:A, 6uob:B, 6uoc:A, 6v79:A, 6v79:B, 6v7a:A, 6vnr:A, 6vnr:B, 5w5k:A, 5w5k:B, 5w5k:C, 5wgi:A, 5wgk:A, 5wgl:A, 5wgl:B, 5wgm:A, 5wgm:B, 5wgm:C, 6wsj:A, 6wyo:A, 6wyo:B, 6wyp:A, 6wyq:A, 6wyq:B, 6zw1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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