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BioLiP
>protein
EARYLFRYLSSAPVVATLALIIISVILIVLNYLFPGLQYGTFF

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7lx0:S 43 43 1.0000 1.0000 1.0000 4.91e-24 7lx0:j, 7lx0:J, 6pnj:J, 6pnj:S, 6pnj:j
2 7s3d:J 41 40 0.5581 0.5854 0.6000 1.76e-13 7s3d:S, 7s3d:j
3 6k61:J 45 37 0.3953 0.3778 0.4595 2.39e-05 6jeo:aJ, 6jeo:bJ, 6jeo:cJ, 6jeo:dJ, 6k61:j, 6tcl:J1, 6tcl:J2, 6tcl:J, 6tcl:JJ, 7y3f:J
4 7blz:J 38 32 0.4419 0.5000 0.5938 3.67e-05 6fos:J, 8wey:J, 5zgb:J, 5zgh:J
5 6kif:J 41 33 0.4186 0.4390 0.5455 1.38e-04 6kif:T, 6kif:l, 6kig:J, 6kig:T, 6kig:l
6 7qco:q 37 35 0.4186 0.4865 0.5143 4.71e-04 7qco:j
7 4fe1:J 41 35 0.3256 0.3415 0.4000 0.005 7fix:J1, 7fix:J2, 7fix:J3, 1jb0:J, 6k33:aJ, 6k33:bJ, 6k33:cJ, 7m75:J, 7m76:J, 7m78:J, 3pcq:J, 6pfy:J, 6pfy:S, 6pfy:f, 6pgk:J, 6pgk:S, 6pgk:f, 6tra:J, 6trc:J, 6trc:j, 6trc:8, 6trd:J, 6trd:j, 6trd:8, 5zf0:J1, 5zf0:J2, 5zf0:J3, 5zf0:J4, 5zf0:J6, 5zf0:J5
8 7yca:J 41 29 0.3256 0.3415 0.4828 0.015
9 7d0j:J 41 29 0.3023 0.3171 0.4483 0.036 7bgi:J, 7blx:J, 7dz7:J, 7dz8:J, 8h2u:J, 6ijj:J, 6ijo:J, 6jo5:J, 6jo6:J, 7r3k:J, 7wyi:J, 7wzn:J, 7zq9:J, 7zqc:J, 7zqd:J, 7zqd:J2
10 8htu:J 41 29 0.3256 0.3415 0.4828 0.043 7ksq:J, 7kux:J, 6l35:J, 7xqp:J
11 7dr0:J 37 31 0.3023 0.3514 0.4194 0.046 7dr1:J, 7dr2:aJ, 7dr2:bJ, 7dr2:cJ, 7dr2:dJ
12 7a4p:J 41 29 0.2791 0.2927 0.4138 0.048 6zzx:J, 6zzy:J
13 5l8r:J 42 34 0.3488 0.3571 0.4412 0.051 7dkz:J, 6ly5:j, 4rku:J, 4xk8:J, 4xk8:j, 4y28:J, 6yac:J, 6yez:J, 6zoo:J, 6zxs:J
14 8cmo:J 40 29 0.3023 0.3250 0.4483 0.059
15 6igz:J 41 29 0.3023 0.3171 0.4483 0.062
16 8wm6:J 42 33 0.3023 0.3095 0.3939 0.068 8wmj:J, 8wmv:J, 8wmw:J, 7y7b:J, 7y8a:J
17 8bcv:J 43 34 0.3488 0.3488 0.4412 0.074 7ew6:J, 7ewk:J, 7f9o:J, 7f9o:m, 8j6z:J, 8j7a:J, 8j7b:J, 3lw5:J, 2o01:J, 7wfd:AJ, 7wfe:BJ, 7wg5:AJ, 7wg5:BJ, 8wgh:J, 2wsc:J, 2wse:J, 2wsf:J, 5zji:J
18 6l4u:J 41 31 0.2558 0.2683 0.3548 0.078
19 6qph:J 41 28 0.3256 0.3415 0.5000 0.21 6rhz:J, 6sl5:J, 6yxr:J
20 7coy:aJ 35 33 0.2326 0.2857 0.3030 0.53 7coy:bJ, 7coy:cJ
21 6vpv:J 39 37 0.3023 0.3333 0.3514 0.79 6vpv:j, 6vpv:8
22 7y5e:JN 38 29 0.2326 0.2632 0.3448 2.9 7y5e:J2, 7y7a:J7, 7y7a:Jo
23 8jmh:A 407 30 0.2558 0.0270 0.3667 6.0 8jmh:B, 8jmh:C, 8jmh:D, 8jmi:A, 8jmi:B, 8jmi:C, 8jmi:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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