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BioLiP
>protein
EAPEGAGEVGLEQWLETSLERINREARLHFHPEFLFRLWNTCVEHWHDRHQRSLDYAKYRYLLLMHKAMYTHMQQGCPC

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5aja:B 84 79 1.0000 0.9405 1.0000 1.58e-56 4z8l:B, 4z8l:E
2 4cc9:B 98 80 0.4177 0.3367 0.4125 2.31e-17
3 8a8w:F 552 43 0.1899 0.0272 0.3488 0.054 8a8u:F, 8a8v:F
4 8a8w:D 577 32 0.1519 0.0208 0.3750 0.27 8a8u:B, 8a8u:C, 8a8u:D, 8a8u:E, 8a8u:A, 8a8v:B, 8a8v:C, 8a8v:D, 8a8v:E, 8a8v:A, 8a8w:A, 8a8w:B, 8a8w:C, 8a8w:E
5 3krf:D 295 27 0.1646 0.0441 0.4815 2.1 3kra:A, 3kra:D, 3krc:A, 3krc:D, 3krf:A, 3kro:A, 3kro:D, 3krp:A, 3krp:D, 3oab:A, 3oab:D, 3oac:D
6 3si5:A 152 37 0.1646 0.0855 0.3514 3.2 3si5:B
7 3ref:B 180 32 0.1646 0.0722 0.4062 4.5 4dvg:A, 3ref:A, 3reg:A, 3reg:B
8 8cen:R 268 39 0.1899 0.0560 0.3846 8.8 8ceo:R, 7o4i:R, 7o4j:R, 7o72:R, 7o73:R, 7o75:R, 7zs9:R, 7zsa:R, 7zsb:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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