Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYIEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRT
FSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVD

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6f5u:B 131 131 0.9924 0.9924 0.9924 1.20e-95 6f6i:B, 6f6n:B, 6f6s:B, 8f87:B, 6g95:B, 6g9b:B, 6hro:B, 6hs4:B, 5jq7:B, 5jqb:B, 7lyd:B, 7lyy:B, 7m2d:B, 6nae:B, 7ssq:B, 7ssr:B
2 1mg1:A 450 47 0.0992 0.0289 0.2766 0.43
3 7p6u:A 772 57 0.1527 0.0259 0.3509 0.48 7p6u:B, 7p6u:C, 7p6u:D, 7p6u:E
4 6kaf:B 503 76 0.1908 0.0497 0.3289 0.97 6kac:B, 6kac:b, 6kad:B, 6kad:b, 6kaf:b, 8kde:B, 7pi0:B, 7pi0:b, 7pi5:B, 7pi5:b, 7pin:B, 7pin:b, 7pin:B1, 7pin:b1, 7piw:B, 7piw:b, 7piw:B1, 7piw:b1, 7pnk:B, 7pnk:b, 8r2i:B, 8zee:B
5 6rm3:SL0 157 36 0.0992 0.0828 0.3611 2.1
6 7t3l:J 228 29 0.0992 0.0570 0.4483 3.1 7t3l:K, 7taw:J, 7taw:K, 7tax:J, 7tax:K
7 7kh2:D 415 31 0.0763 0.0241 0.3226 3.9 7kh2:A, 7kh2:B, 7kh2:C
8 6vpq:A 87 59 0.1221 0.1839 0.2712 5.4 6vpq:B, 6vpq:C, 6vpq:E, 6vpq:F, 5vyc:l1, 5vyc:l2, 5vyc:l3, 5vyc:l4, 5vyc:l5, 5vyc:l6
9 3g5i:A 305 129 0.2595 0.1115 0.2636 5.5 3g5i:B, 3g5i:C, 3g5i:D, 1yoe:A
10 8zmr:A 384 36 0.0840 0.0286 0.3056 5.6
11 6kbn:C 504 27 0.0840 0.0218 0.4074 5.6 6kbm:A, 6kbn:A
12 8bd3:B 504 80 0.1908 0.0496 0.3125 7.1 8bd3:b
13 2c1z:A 439 51 0.1069 0.0319 0.2745 7.6 2c1x:A, 2c9z:A
14 8r7i:A 628 30 0.0992 0.0207 0.4333 9.7

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218