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BioLiP
>protein
EAHKESELHQNRLRWVETMKWWEEIGEPHHQQHAASEWEWFRQRVLPAKAAAMGLSEEDAARELRRAVMHETPRWYSRIQ
PPNARSEIKEPRDQRWPSSPKW

The query sequence (length=102) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hiv:BY 102 102 1.0000 1.0000 1.0000 1.87e-69 6hix:BY
2 7aih:Ay 142 102 0.5882 0.4225 0.5882 2.54e-39 7ane:Ay
3 6abw:A 369 40 0.1176 0.0325 0.3000 1.7
4 5jig:A 118 57 0.1961 0.1695 0.3509 2.0
5 6oix:C 478 80 0.2353 0.0502 0.3000 4.4 6oix:A, 6oix:B, 6oix:D, 6oix:E, 6oix:F, 7u66:A, 7u66:B, 7u66:C, 7u66:D, 7u66:E, 7u66:F, 7u67:A, 7u67:D, 7u67:C, 7u67:B, 7u67:F, 7u67:E
6 5evo:A 213 56 0.1373 0.0657 0.2500 5.4
7 6mgb:A 321 49 0.1471 0.0467 0.3061 8.7
8 2r0y:A 283 28 0.1078 0.0389 0.3929 9.0
9 7xq5:A 75 34 0.1275 0.1733 0.3824 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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