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BioLiP
>protein
EAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDR
LQLL

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7s7j:A 84 84 1.0000 1.0000 1.0000 1.93e-56
2 4u7i:A 93 85 0.3810 0.3441 0.3765 5.41e-09
3 5u1x:A 321 89 0.3333 0.0872 0.3146 0.061 8jv7:A, 8jv7:B, 8jv7:C, 8jv8:A, 8jv8:B, 8jv8:C, 5u1u:A, 5u1y:A
4 6bt4:A 165 59 0.1905 0.0970 0.2712 1.0
5 9fmd:U 295 68 0.2381 0.0678 0.2941 1.7 8c6j:h, 6icz:Z, 6qdv:c, 7w5a:1, 7w5b:1, 5xjc:Z
6 6q2m:A 544 57 0.1548 0.0239 0.2281 5.0 1ba3:A, 5dwv:A, 4e5d:A, 4g36:A, 4g36:B, 4g37:A, 4g37:B, 5gyz:A, 5gz2:A, 6hps:A, 6hps:B, 3ies:A, 5kyt:A, 5kyt:B, 5kyv:A, 5kyv:B, 6q2m:B, 6q2m:C, 3rix:A, 5wys:A
7 1gkp:A 458 28 0.1429 0.0262 0.4286 6.0 1gkp:B, 1gkp:C, 1gkp:D, 1gkp:E, 1gkp:F, 1gkq:A, 1gkq:B, 1gkq:C, 1gkq:D
8 6t46:G 365 15 0.1071 0.0247 0.6000 9.1 6t46:A, 6t46:C, 6t46:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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