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BioLiP
>protein
EAEFIAGTALTMVGMTLVGLAIGFVLLRVESLVE

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1q90:M 34 34 1.0000 1.0000 1.0000 2.12e-16
2 7zyv:F 37 26 0.5294 0.4865 0.6923 1.27e-05 7qrm:F, 7qrm:N, 6rqf:N, 6rqf:F, 7zyv:N
3 7zxy:F 36 26 0.3529 0.3333 0.4615 0.007 7r0w:N, 7r0w:F, 7zxy:N
4 2j68:A 680 21 0.2353 0.0118 0.3810 7.2 2w6d:A, 2w6d:B
5 1dwo:A 262 28 0.3235 0.0420 0.3929 8.3 1dwq:A, 1e8d:A, 1e8d:B, 1eb9:A, 1eb9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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