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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
EAALVEGQVKLRDKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIICLS
QAVMLGFDSHEAMCAWDTRIRYALGEVHRFHVTVAPGTKLESGPATLHLCNDILVLARDIPPTVMGQWKLSDLRRYGAVP
NGFIFEGGTRCGYWAGVFFLSSAEGEQMSFLFDCIVRGISPTKGPF

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ml4:C 208 208 1.0000 0.9904 0.9904 2.76e-152 3ml4:A, 3ml4:B, 3ml4:D
2 1xr0:B 129 93 0.1311 0.2093 0.2903 1.84e-04 2mfq:A
3 2kup:A 146 89 0.1311 0.1849 0.3034 6.97e-04 2ys5:A
4 1uef:A 105 56 0.0874 0.1714 0.3214 0.085 1uef:B
5 8c18:A 207 45 0.0728 0.0725 0.3333 0.95
6 1rwc:A 754 38 0.0631 0.0172 0.3421 1.6 1rwf:A, 1rwg:A, 1rwh:A
7 4yd9:A 1656 47 0.0874 0.0109 0.3830 2.0 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
8 7pt6:2 629 54 0.0874 0.0286 0.3333 2.7 5bk4:2, 5bk4:A, 6eyc:2, 6f0l:A, 6f0l:2, 3ja8:2, 7p30:2, 7p30:A, 7p5z:2, 7p5z:A, 7pt6:B, 7pt7:2, 7pt7:B, 6rqc:2, 6sko:2, 5u8s:2, 7v3u:2, 7v3u:B, 7v3v:2, 7v3v:B, 5v8f:2, 8w7m:2, 7w8g:2, 7w8g:B
9 3tfm:A 208 70 0.1068 0.1058 0.3143 3.3
10 6b8w:B 95 59 0.0583 0.1263 0.2034 3.5
11 8xgc:2 778 54 0.0874 0.0231 0.3333 4.8 8kg6:2, 8kg8:2, 8kg9:2, 8p5e:2, 8p62:2, 8p63:2, 7pmk:2, 7pmn:2, 6ptn:i, 6ptn:2, 6pto:h, 6pto:2, 7qhs:2, 6skl:2, 6u0m:2, 7z13:2, 7z13:a
12 3all:B 371 81 0.1068 0.0593 0.2716 8.6 3alj:A, 3all:A, 3alm:A, 3alm:B, 4gf7:A, 3gmb:A, 3gmb:B, 3gmc:A, 3gmc:B, 4h2n:A, 4h2p:A, 4h2p:B, 4h2p:C, 4h2p:D, 4h2q:A, 4h2r:A, 4h2r:B, 5hxi:A, 4jy2:A, 4jy2:B, 4jy3:A, 4jy3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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