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BioLiP
>protein
EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIP

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6evq:A 70 65 0.9846 0.9143 0.9846 2.73e-41 6evq:B, 3gjo:A, 3gjo:B, 3gjo:C, 3gjo:D, 5n74:A, 5n74:B, 5n74:C, 5n74:D, 5n74:E, 5n74:F, 5n74:G, 5n74:H, 7olg:A, 7olg:B
2 5m9e:B 71 49 0.3385 0.3099 0.4490 6.44e-07 5m9e:A, 5m9e:C, 5m9e:D
3 1qs0:A 407 31 0.2000 0.0319 0.4194 0.52
4 4eot:A 92 26 0.2154 0.1522 0.5385 1.1 4eot:B
5 6k02:B 269 45 0.2000 0.0483 0.2889 1.1 6k02:A
6 2wty:B 97 26 0.2000 0.1340 0.5000 1.5 4auw:A, 4auw:B, 4auw:E, 4auw:F, 2wt7:B, 2wty:A
7 2dq0:A 447 50 0.2154 0.0313 0.2800 1.8 2dq0:B, 2zr2:A, 2zr2:B
8 1htw:A 158 19 0.1692 0.0696 0.5789 2.1 1htw:B, 1htw:C
9 1a05:A 357 63 0.2769 0.0504 0.2857 2.8 1a05:B
10 1y7i:B 262 32 0.1692 0.0420 0.3438 3.1 1xkl:A, 1xkl:B, 1xkl:C, 1xkl:D, 1y7i:A
11 7myl:B 158 24 0.1538 0.0633 0.4167 4.8 5ecc:A, 5ecc:B, 5ecx:A, 5ecx:B, 7myl:A, 7myl:C, 7myl:D, 7myl:E, 7myl:F, 7reg:A, 7reg:B, 7rgj:A, 7rgj:B
12 3acw:A 284 29 0.2000 0.0458 0.4483 6.0 3acx:A, 3acy:A, 3adz:A, 3ae0:A, 3ae0:B, 4e9u:A, 4e9z:A, 4ea0:A, 4ea0:B, 4ea1:A, 4ea2:A, 4f6v:A, 4f6x:A, 3lgz:B, 3npr:A, 3nri:A, 3tfn:A, 3tfp:A, 3tfv:A, 3vje:A, 3vje:B, 3w7f:A, 3w7f:B, 2zcq:A, 2zcr:A, 2zcs:A, 2zy1:A
13 7zlg:A 662 42 0.2000 0.0196 0.3095 10.0 7zli:A, 7zlj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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